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SCN18_30_10_14_R3_P_scaffold_17

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Displaying items 1-30 of 482 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R3_P_scaffold_17_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..618
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037A7097
Tax=RIFOXYD1_FULL_RIF_OD1_10_39_35_curated
SCN18_30_10_14_R3_P_scaffold_17_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

621..776
DNA (156bp) protein (52aa)
SCN18_30_10_14_R3_P_scaffold_17_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1058..1309
DNA (252bp) protein (84aa)
SCN18_30_10_14_R3_P_scaffold_17_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1350..1583
DNA (234bp) protein (78aa)
SCN18_30_10_14_R3_P_scaffold_17_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1580..1741
DNA (162bp) protein (54aa)
SCN18_30_10_14_R3_P_scaffold_17_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1746..3170
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E001E8
Uncharacterized protein {ECO:0000313|EMBL:KKL46355.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCN18_30_10_14_R3_P_scaffold_17_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3157..3648
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EKY9_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK52017.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCN18_30_10_14_R3_P_scaffold_17_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3629..3826
DNA (198bp) protein (66aa)
SCN18_30_10_14_R3_P_scaffold_17_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3804..4250
DNA (447bp) protein (149aa)
SCN18_30_10_14_R3_P_scaffold_17_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4251..5180
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G7B6_HERAR
Uncharacterized protein {ECO:0000313|EMBL:CDN91997.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCN18_30_10_14_R3_P_scaffold_17_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5191..5943
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CFR7_AGRT5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK89566.1}; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCN18_30_10_14_R3_P_scaffold_17_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5951..7417
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037AE49F
Uncharacterized protein {ECO:0000313|EMBL:ESX23309.1}; TaxID=1287321 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC264A00.;"
SCN18_30_10_14_R3_P_scaffold_17_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7418..10489
DNA (3072bp) protein (1024aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. AKP1 RepID=L1KFG6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ETW12822.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax atlanticus.;"
hypothetical protein
SCN18_30_10_14_R3_P_scaffold_17_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10479..11123
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003130D8D
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:KHQ50275.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
Phage-related minor tail protein
SCN18_30_10_14_R3_P_scaffold_17_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11120..11293)
DNA (174bp) protein (58aa)
SCN18_30_10_14_R3_P_scaffold_17_trna_3
unknown

Not on your lists

comp(11394..11465)
DNA (72bp)
transferRNA Thr
SCN18_30_10_14_R3_P_scaffold_17_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11806..12516)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037D0B09
Putative phosphoesterase, ICC {ECO:0000313|EMBL:KFC75507.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
metallophosphoesterase
SCN18_30_10_14_R3_P_scaffold_17_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12513..15002)
DNA (2490bp) protein (830aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036DB94F
DEAD/H associated domain protein {ECO:0000313|EMBL:KFC75506.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DEAD/DEAH box helicase
SCN18_30_10_14_R3_P_scaffold_17_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15108..16064)
DNA (957bp) protein (319aa)
Type 11 methyltransferase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9X0F6_9RHIZ
Putative methyltransferase (Contains TPR repeat) {ECO:0000313|EMBL:KFC75505.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCN18_30_10_14_R3_P_scaffold_17_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16104..17159
DNA (1056bp) protein (352aa)
beta-lactamase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036BD7AB
Putative metallo-hydrolase/oxidoreductase {ECO:0000313|EMBL:KFC75504.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative mRNA 3-end processing factor
SCN18_30_10_14_R3_P_scaffold_17_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17156..18787
DNA (1632bp) protein (544aa)
ATP-dependent DNA ligase LigC n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RMB7_9RHIZ
ATP dependent DNA ligase {ECO:0000313|EMBL:KFC75502.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ATP dependent DNA ligase
SCN18_30_10_14_R3_P_scaffold_17_21
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19080..19757
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037FE8B2
Putative two-component transcriptional regulator, LuxR family {ECO:0000313|EMBL:KFC75501.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
LuxR family transcriptional regulator
SCN18_30_10_14_R3_P_scaffold_17_22
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19877..20146
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000379C78A
Aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A {ECO:0000313|EMBL:KFC75499.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCN18_30_10_14_R3_P_scaffold_17_23
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20193..20528)
DNA (336bp) protein (112aa)
Plastocyanin n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RD57_PHEZH
plastocyanin
Plastocyanin {ECO:0000313|EMBL:ACG76661.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCN18_30_10_14_R3_P_scaffold_17_24
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20528..21046)
DNA (519bp) protein (173aa)
Outer membrane-like protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBV5_SPHWW
hypothetical protein
Outer membrane-like protein {ECO:0000313|EMBL:ABQ69771.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_30_10_14_R3_P_scaffold_17_25
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21134..21778)
DNA (645bp) protein (215aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
GTP cyclohydrolase 1 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VRG1_9GAMM
GTP cyclohydrolase I
SCN18_30_10_14_R3_P_scaffold_17_26
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21908..22630
DNA (723bp) protein (241aa)
RNA polymerase sigma factor n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RD59_PHEZH
RNA polymerase sigma-70 factor,ECF subfamily
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCN18_30_10_14_R3_P_scaffold_17_27
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22644..23732)
DNA (1089bp) protein (363aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
dihydroorotate dehydrogenase 2 (EC:1.3.98.1)
Dihydroorotate oxidase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UQH7_METS4
SCN18_30_10_14_R3_P_scaffold_17_28
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23729..24097)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FEW8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC75496.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCN18_30_10_14_R3_P_scaffold_17_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24401..25027
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035E4AEA
LexA repressor {ECO:0000313|EMBL:CEJ15705.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
phage repressor
Displaying items 1-30 of 482 in total

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