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SCN18_31_3_15_R1_B_scaffold_211

Search features with annotation key words

Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R1_B_scaffold_211_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..2806
DNA (2805bp) protein (935aa)
cobN; cobaltochelatase subunit CobN (EC:6.6.1.2)
Hydrogenobyrinic acid a,c-diamide cobaltochelatase {ECO:0000313|EMBL:ABE37874.1}; EC=6.6.1.2 {ECO:0000313|EMBL:ABE37874.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035CF526
SCN18_31_3_15_R1_B_scaffold_211_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2803..3426
DNA (624bp) protein (208aa)
Cob(I)yrinic acid a,c-diamide adenosyltransferase (CobA/CobO) {ECO:0000313|EMBL:AEV37998.1}; EC=2.5.1.17 {ECO:0000313|EMBL:AEV37998.1};; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
cobinamide adenolsyltransferase n=1 Tax=Kaistia granuli RepID=UPI000375F7A2
Cob(I)yrinic acid a,c-diamide adenosyltransferase (CobA/CobO)
SCN18_31_3_15_R1_B_scaffold_211_3
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3444..4883
DNA (1440bp) protein (480aa)
Cobyric acid synthase n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IXE1_POLGS
Cobyric acid synthase CobQ
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_31_3_15_R1_B_scaffold_211_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4858..5850)
DNA (993bp) protein (331aa)
Cobalamin biosynthesis protein CobD n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CD39_9RHOB
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
cobalamin biosynthesis protein, adenosylcobinamide-phosphate synthase
SCN18_31_3_15_R1_B_scaffold_211_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6023..6265)
DNA (243bp) protein (81aa)
SCN18_31_3_15_R1_B_scaffold_211_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6385..7500)
DNA (1116bp) protein (372aa)
Transcriptional regulator, LuxR family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UN84_METS4
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACA14627.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCN18_31_3_15_R1_B_scaffold_211_trna_1
unknown

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7757..7835
DNA (79bp)
transferRNA Cys
SCN18_31_3_15_R1_B_scaffold_211_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8015..8680
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036E09BE
Protein-L-isoaspartate O-methyltransferase {ECO:0000313|EMBL:CEJ13396.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
methyltransferase transmembrane protein
SCN18_31_3_15_R1_B_scaffold_211_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8969..10270
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037A4049
Type I secretion outer membrane protein, TolC {ECO:0000313|EMBL:EEA96577.1}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
outer membrane protein TolC
SCN18_31_3_15_R1_B_scaffold_211_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10382..11041
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B6F266
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEG08106.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCN18_31_3_15_R1_B_scaffold_211_10
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11134..13050
DNA (1917bp) protein (639aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036F4A53
dnaG; DNA primase
SCN18_31_3_15_R1_B_scaffold_211_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13131..14129)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V1U4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87860.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCN18_31_3_15_R1_B_scaffold_211_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14275..15174
DNA (900bp) protein (300aa)
RNA polymerase sigma factor RpoD n=1 Tax=Kaistia granuli RepID=UPI00036360B8
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
RNA polymerase sigma-70 subunit RpoD
SCN18_31_3_15_R1_B_scaffold_211_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15337..18219
DNA (2883bp) protein (961aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003634EFA
valS; valyl-tRNA synthetase
SCN18_31_3_15_R1_B_scaffold_211_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18364..19161
DNA (798bp) protein (266aa)
SCN18_31_3_15_R1_B_scaffold_211_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19218..19796)
DNA (579bp) protein (193aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_00527}; EC=3.2.2.- {ECO:0000255|HAMAP-Rule:MF_00527};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
3-methyladenine DNA glycosylase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B39547
3-methyladenine DNA glycosylase
SCN18_31_3_15_R1_B_scaffold_211_16
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20001..20825
DNA (825bp) protein (275aa)
SCN18_31_3_15_R1_B_scaffold_211_17
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20962..22398)
DNA (1437bp) protein (479aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Rhizobium sp. AP16 RepID=J2WDA8_9RHIZ
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:EJK80605.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
putative major facilitator superfamily (MFS) drug efflux transporter
SCN18_31_3_15_R1_B_scaffold_211_18
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22588..23379
DNA (792bp) protein (264aa)
PREDICTED: uncharacterized protein C2A9.02-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C10D4A
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CDX28290.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
DTDP-glucose 4,6-dehydratase
SCN18_31_3_15_R1_B_scaffold_211_19
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23430..24839)
DNA (1410bp) protein (470aa)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
glutamine synthetase n=1 Tax=Kaistia granuli RepID=UPI00035DCBF9
glutamine synthetase
SCN18_31_3_15_R1_B_scaffold_211_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24949..25287)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Kaistia granuli RepID=UPI00037C605D
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CAL77956.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCN18_31_3_15_R1_B_scaffold_211_21
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25502..27046
DNA (1545bp) protein (515aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRC9_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05162.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_31_3_15_R1_B_scaffold_211_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27079..27891)
DNA (813bp) protein (271aa)
UbiE n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YD82_9RHIZ
UbiE {ECO:0000313|EMBL:EHH10322.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
type 11 methyltransferase
SCN18_31_3_15_R1_B_scaffold_211_trna_2
unknown

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28051..28132
DNA (82bp)
transferRNA Leu
SCN18_31_3_15_R1_B_scaffold_211_23
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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28228..29583
DNA (1356bp) protein (452aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
tig; trigger factor (EC:5.2.1.8)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375557B
SCN18_31_3_15_R1_B_scaffold_211_24
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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29823..30449
DNA (627bp) protein (209aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YIP0_MOBAS
SCN18_31_3_15_R1_B_scaffold_211_25
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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30673..31947
DNA (1275bp) protein (425aa)
ATP-dependent protease n=1 Tax=Kaistia granuli RepID=UPI000370C289
ATP-dependent Clp protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCN18_31_3_15_R1_B_scaffold_211_26
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32272..34713
DNA (2442bp) protein (814aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
peptidase n=1 Tax=Kaistia granuli RepID=UPI00037C333D
ATP-dependent protease La
SCN18_31_3_15_R1_B_scaffold_211_27
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34907..35182
DNA (276bp) protein (92aa)
transcriptional regulator n=1 Tax=Kaistia granuli RepID=UPI00036F1C90
Histone-like DNA-binding protein
Histone-like DNA-binding protein {ECO:0000313|EMBL:ADZ70491.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_31_3_15_R1_B_scaffold_211_28
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35278..35649)
DNA (372bp) protein (124aa)
Displaying items 1-30 of 140 in total

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