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SCN18_31_3_15_R1_B_scaffold_308

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R1_B_scaffold_308_1
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(239..1153)
DNA (915bp) protein (305aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:ABE61909.1}; EC=1.1.1.133 {ECO:0000313|EMBL:ABE61909.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
dTDP-4-dehydrorhamnose reductase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD8_NITHX
SCN18_31_3_15_R1_B_scaffold_308_2
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1153..1707)
DNA (555bp) protein (185aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:ABE61908.1}; EC=5.1.3.13 {ECO:0000313|EMBL:ABE61908.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD9_NITHX
SCN18_31_3_15_R1_B_scaffold_308_3
Enterobacter cloacae_SCNPILOT_CONT_500_P_Enterobacter_55_6.1, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1813..2688
DNA (876bp) protein (292aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPE0_NITHX
glucose-1-phosphate thymidylyltransferase
SCN18_31_3_15_R1_B_scaffold_308_4
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2713..3780
DNA (1068bp) protein (356aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPE1_NITHX
dTDP-glucose 4,6-dehydratase
SCN18_31_3_15_R1_B_scaffold_308_5
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3842..5092)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPE3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61904.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_308_6
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5423..6346)
DNA (924bp) protein (308aa)
Glycosyl transferase, family 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPE4_NITHX
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE61903.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_308_7
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6360..8564)
DNA (2205bp) protein (735aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPE5_NITHX
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:ABE61902.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_308_8
Candidatus Amoebophilus asiaticus_SCNPILOT_CONT_500_P_Amoebophilus_asiaticus_42_9.0, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(8726..10771)
DNA (2046bp) protein (682aa)
Sel1-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPE6_NITHX
Sel1-like protein
Sel1-like protein {ECO:0000313|EMBL:ABE61901.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_308_9
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10768..12117)
DNA (1350bp) protein (450aa)
Type I secretion membrane fusion protein, HlyD n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPE7_NITHX
Type I secretion membrane fusion protein, HlyD
Type I secretion membrane fusion protein, HlyD {ECO:0000313|EMBL:ABE61900.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_308_10
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12107..14341)
DNA (2235bp) protein (745aa)
ABC transporter related protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPE8_NITHX
ABC transporter related protein {ECO:0000313|EMBL:ABE61899.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
ABC transporter
SCN18_31_3_15_R1_B_scaffold_308_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14805..15428)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPE9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61898.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_308_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15755..16903)
DNA (1149bp) protein (383aa)
Hemolysin-type calcium-binding region n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) PF0_NITHX">RepID=Q1QPF0_NITHX
Hemolysin-type calcium-binding region {ECO:0000313|EMBL:ABE61897.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
hemolysin-type calcium-binding region
SCN18_31_3_15_R1_B_scaffold_308_13
Paracoccus sp. 361_CN-SCN_Paracoccus_21x, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17405..18064
DNA (660bp) protein (220aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) PF1_NITHX">RepID=Q1QPF1_NITHX
cobyrinic acid a,c-diamide synthase
Cobyrinic acid a,c-diamide synthase {ECO:0000313|EMBL:ABE61896.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_308_14
SCNPILOT_SOLID_1_TRIM150_Plasmid_2, SCNPILOT_SOLID_1_TRIM150_Plasmid_2, SCNPILOT_SOLID_1_TRIM150_Plasmid_2, SCNPILOT_SOLID_1_TRIM150_Plasmid_2, SCNPILOT_SOLID_1_TRIM150_Plasmid_2, Plasmid-like

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comp(18109..18504)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) PF2_NITHX">RepID=Q1QPF2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61895.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_308_15
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19304..20332)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXU1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35201.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCN18_31_3_15_R1_B_scaffold_308_16
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20385..20846)
DNA (462bp) protein (154aa)
tagD; glycerol-3-phosphate cytidylyltransferase TagD (EC:2.7.7.39)
Putative cytidylyltransferase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXT7_9BRAD
Putative cytidylyltransferase {ECO:0000313|EMBL:EAQ35202.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCN18_31_3_15_R1_B_scaffold_308_17
Chlamydia sp. 'Rubis'_SCNPILOT_EXPT_500_P_Chlamydiales_33_8, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(20858..21940)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXT2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35203.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCN18_31_3_15_R1_B_scaffold_308_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22020..23357)
DNA (1338bp) protein (446aa)
gt4C; glycosyl transferase family protein (EC:2.4.1.-)
Putative glycosyltransferase, forming alpha glycosyl linkages protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXT3_9BRAD
Putative glycosyltransferase, forming alpha glycosyl linkages protein {ECO:0000313|EMBL:EAQ35204.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCN18_31_3_15_R1_B_scaffold_308_19
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23354..24895)
DNA (1542bp) protein (514aa)
Putative bifunctional glycosyltransferase, forming alpha-glycosyland beta-glycosyl linkages protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXT4_9BRAD
Putative bifunctional glycosyltransferase, forming alpha-glycosyland beta-glycosyl linkages protein {ECO:0000313|EMBL:EAQ35205.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
expE2; glycosyltransferase
SCN18_31_3_15_R1_B_scaffold_308_20
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24916..25437)
DNA (522bp) protein (174aa)
Putative glycosyl transferase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXT5_9BRAD
Putative glycosyl transferase {ECO:0000313|EMBL:EAQ35206.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCN18_31_3_15_R1_B_scaffold_308_21
unknown

Not on your lists

comp(25892..26056)
DNA (165bp) protein (55aa)

This feature has no annotations

SCN18_31_3_15_R1_B_scaffold_308_22
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26891..27115)
DNA (225bp) protein (75aa)
Transposase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUC3_9BRAD
Transposase {ECO:0000313|EMBL:EAQ36418.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
transposase, IS4
SCN18_31_3_15_R1_B_scaffold_308_23
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27539..28954
DNA (1416bp) protein (472aa)
Cytochrome bd ubiquinol oxidase, subunit I n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP27_AGRRK
Cytochrome D ubiquinol oxidase subunit I {ECO:0000313|EMBL:KEA08347.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
cytochrome bd ubiquinol oxidase subunit I
SCN18_31_3_15_R1_B_scaffold_308_24
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28960..29964
DNA (1005bp) protein (335aa)
Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP28_AGRRK
cydB; cytochrome d ubiquinol oxidase, subunit II
Ubiquinol oxidase subunit II {ECO:0000313|EMBL:KEA08346.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCN18_31_3_15_R1_B_scaffold_308_25
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29964..30080
DNA (117bp) protein (39aa)
Oxidase {ECO:0000313|EMBL:KEO89121.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
SCN18_31_3_15_R1_B_scaffold_308_26
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30382..30861)
DNA (480bp) protein (160aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ35_NITHX
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ABE61662.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_31_3_15_R1_B_scaffold_308_trna_2
unknown

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comp(31398..31469)
DNA (72bp)
transferRNA Gln
SCN18_31_3_15_R1_B_scaffold_308_27
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31737..33521
DNA (1785bp) protein (595aa)
Acyl-CoA dehydrogenase-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ36_NITHX
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:ABE61661.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
acyl-CoA dehydrogenase
SCN18_31_3_15_R1_B_scaffold_308_28
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33653..34417
DNA (765bp) protein (255aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:ABE61660.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ABE61660.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Enoyl-CoA hydratase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ37_NITHX
enoyl-CoA hydratase/isomerase
SCN18_31_3_15_R1_B_scaffold_308_29
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34576..35505
DNA (930bp) protein (310aa)
Histone deacetylase superfamily n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQ38_NITHX
histone deacetylase superfamily protein
Histone deacetylase superfamily {ECO:0000313|EMBL:ABE61659.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 1-30 of 83 in total

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