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SCN18_31_3_15_R3_B_scaffold_87

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R3_B_scaffold_87_1
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40..1044)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=4 Tax=Pseudomonas aeruginosa RepID=G4LFV8_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI06508.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_31_3_15_R3_B_scaffold_87_2
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1262..1516)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R1T6_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94328.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCN18_31_3_15_R3_B_scaffold_87_3
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1898..3169)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0ILL4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB12665.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
int; phage integrase
SCN18_31_3_15_R3_B_scaffold_87_4
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3396..4127
DNA (732bp) protein (244aa)
Putative uncharacterized protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QQJ6_9CAUL
Putative uncharacterized protein {ECO:0000313|EMBL:EGF90483.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
SCN18_31_3_15_R3_B_scaffold_87_5
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4161..4682)
DNA (522bp) protein (174aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71619.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_87_6
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4779..5036)
DNA (258bp) protein (86aa)
pilus biosynthesis protein PilZ n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCE47
pilus assembly protein PilZ
Pilus assembly protein PilZ {ECO:0000313|EMBL:AJP71618.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_87_7
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5173..5403)
DNA (231bp) protein (77aa)
50S ribosomal protein L31 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D7E8D0
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
50S ribosomal protein L31
SCN18_31_3_15_R3_B_scaffold_87_8
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5539..6033)
DNA (495bp) protein (165aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
3-hydroxyacyl-ACP dehydratase n=1 Tax=Sphingomonas elodea RepID=UPI0002630843
3-hydroxyacyl-ACP dehydratase
SCN18_31_3_15_R3_B_scaffold_87_9
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6030..6794)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EEE9F2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71614.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_87_10
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6794..9613)
DNA (2820bp) protein (940aa)
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630845
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
membrane protein
SCN18_31_3_15_R3_B_scaffold_87_11
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9632..10765)
DNA (1134bp) protein (378aa)
peptidase n=1 Tax=Sphingomonas elodea RepID=UPI0002630846
peptidase
Peptidase {ECO:0000313|EMBL:AJP71613.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_87_12
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10762..11922)
DNA (1161bp) protein (387aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037766E1
1-deoxy-D-xylulose 5-phosphate reductoisomerase
SCN18_31_3_15_R3_B_scaffold_87_13
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11919..12698)
DNA (780bp) protein (260aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938, ECO:0000313|EMBL:AJP74335.1}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphatidate cytidylyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DC9D31
phosphatidate cytidylyltransferase
SCN18_31_3_15_R3_B_scaffold_87_14
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12695..13426)
DNA (732bp) protein (244aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
UDP pyrophosphate synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002630ABA
UDP pyrophosphate synthase
SCN18_31_3_15_R3_B_scaffold_87_15
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13584..14141)
DNA (558bp) protein (186aa)
ribosome recycling factor n=1 Tax=Sphingomonas elodea RepID=UPI0002630ABB
frr; ribosome recycling factor
Ribosome-recycling factor {ECO:0000255|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000255|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000255|HAMAP-Rule:MF_00040}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_31_3_15_R3_B_scaffold_87_16
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14158..14889)
DNA (732bp) protein (244aa)
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
uridylate kinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037BEEF9
SCN18_31_3_15_R3_B_scaffold_87_17
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14973..15380)
DNA (408bp) protein (136aa)
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCN18_31_3_15_R3_B_scaffold_87_18
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15445..15945)
DNA (501bp) protein (167aa)
SCN18_31_3_15_R3_B_scaffold_87_19
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16036..16962)
DNA (927bp) protein (309aa)
elongation factor Ts n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FC9F17
elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_87_20
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17188..17985)
DNA (798bp) protein (266aa)
30S ribosomal protein S2 n=1 Tax=Sphingomonas sp. S17 RepID=F3WVM7_9SPHN
30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000313|EMBL:AJP71607.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_87_21
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18296..18514
DNA (219bp) protein (73aa)
SCN18_31_3_15_R3_B_scaffold_87_22
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18450..19292)
DNA (843bp) protein (281aa)
CDP-diacylglycerol O-phosphatidyl transferase n=1 Tax=Sphingomonas elodea RepID=UPI0002630ABF
CDP-diacylglycerol O-phosphatidyltransferase
CDP-diacylglycerol O-phosphatidyltransferase {ECO:0000313|EMBL:AJP74334.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_87_23
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19289..20017)
DNA (729bp) protein (243aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphatidylserine decarboxylase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000314771A
phosphatidylserine decarboxylase
SCN18_31_3_15_R3_B_scaffold_87_24
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20125..21507
DNA (1383bp) protein (461aa)
Cytochrome P450 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IG35_METNO
cytochrome P450
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_31_3_15_R3_B_scaffold_87_25
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21630..22247
DNA (618bp) protein (206aa)
type 11 methyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002630AC1
methyltransferase
Methyltransferase {ECO:0000313|EMBL:AJP71605.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_87_26
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22326..23546
DNA (1221bp) protein (407aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
isocitrate dehydrogenase (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] n=1 Tax=Sphingobium baderi LL03 RepID=T0GE51_9SPHN
SCN18_31_3_15_R3_B_scaffold_87_27
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23610..24806)
DNA (1197bp) protein (399aa)
membrane protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630F91
membrane protein
Membrane protein {ECO:0000313|EMBL:AIT07460.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_31_3_15_R3_B_scaffold_87_28
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24881..26926
DNA (2046bp) protein (682aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000375171C
Sphingomonas taxi strain 30a NODE_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28530.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
TonB-dependent receptor
SCN18_31_3_15_R3_B_scaffold_87_29
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27074..28873
DNA (1800bp) protein (600aa)
sodium/hydrogen exchanger n=1 Tax=Sphingomonas elodea RepID=UPI0002630697
sodium:proton exchanger
Sodium:proton exchanger {ECO:0000313|EMBL:AJP71602.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_87_30
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28947..29459
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037A6AB0
Displaying items 1-30 of 150 in total

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