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SCN18_31_3_15_R3_B_scaffold_161

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Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R3_B_scaffold_161_1
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..87)
DNA (87bp) protein (29aa)
Transposase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KAL8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ETX13410.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
integrase catalytic subunit
SCN18_31_3_15_R3_B_scaffold_161_2
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

180..1139
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002ECC4D2
helix-turn-helix domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCN18_31_3_15_R3_B_scaffold_161_3
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1295..2038)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B866
Uncharacterized protein {ECO:0000313|EMBL:KEQ53354.1}; Flags: Precursor;; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCN18_31_3_15_R3_B_scaffold_161_4
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3528..4085
DNA (558bp) protein (186aa)
ECF-type sigma factor n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z5F9_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP73401.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_161_5
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4085..5089
DNA (1005bp) protein (335aa)
FecR/PupR family sigma factor regulatory protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B248
Uncharacterized protein {ECO:0000313|EMBL:GAM00335.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
putative anti-sigma factor
SCN18_31_3_15_R3_B_scaffold_161_6
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5188..8121
DNA (2934bp) protein (978aa)
TonB-dependent receptor n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T9D4_CAUSK
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABZ74309.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_31_3_15_R3_B_scaffold_161_7
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8115..10229
DNA (2115bp) protein (705aa)
Acylaminoacyl-peptidase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NEQ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55568.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
putative peptidase
SCN18_31_3_15_R3_B_scaffold_161_8
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10218..11969)
DNA (1752bp) protein (584aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000360C2F0
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP73400.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_161_9
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11966..12616)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4NUM9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KHL53485.1}; TaxID=92824 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. cannabis.;"
hypothetical protein
SCN18_31_3_15_R3_B_scaffold_161_10
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12681..12812)
DNA (132bp) protein (44aa)
SCN18_31_3_15_R3_B_scaffold_161_11
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12873..13004)
DNA (132bp) protein (44aa)
SCN18_31_3_15_R3_B_scaffold_161_12
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13084..13215)
DNA (132bp) protein (44aa)
SCN18_31_3_15_R3_B_scaffold_161_13
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13309..13887)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HEF7_9SPHN
GntR family transcriptional regulator {ECO:0000313|EMBL:KHS45254.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
GntR family transcriptional regulator
SCN18_31_3_15_R3_B_scaffold_161_14
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13884..14768)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00037DCF1D
phytanoyl-CoA dioxygenase
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:AJP74650.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_161_15
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14778..15404)
DNA (627bp) protein (209aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
N-acyl-L-homoserine lactone synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJU2_9SPHN
autoinducer synthase
SCN18_31_3_15_R3_B_scaffold_161_16
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15487..16236)
DNA (750bp) protein (250aa)
LuxR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJU1_9SPHN
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:AJP74187.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_161_17
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16660..17436)
DNA (777bp) protein (259aa)
Possible arsH protein n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJB9_9SPHN
Possible arsH protein {ECO:0000313|EMBL:BAF03423.1}; TaxID=164608 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. KA1.;"
arsenic resistance protein ArsH
SCN18_31_3_15_R3_B_scaffold_161_18
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17433..18110)
DNA (678bp) protein (226aa)
MIP family protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000375C055
MIP family protein {ECO:0000313|EMBL:ETI59471.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
major intrinsic protein
SCN18_31_3_15_R3_B_scaffold_161_19
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18107..19057)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003460166
arsenate reductase
Arsenate reductase {ECO:0000313|EMBL:ABL71415.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCN18_31_3_15_R3_B_scaffold_161_20
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19054..19338)
DNA (285bp) protein (95aa)
Transcriptional regulator, ArsR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ25_SPHAL
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ABF54247.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCN18_31_3_15_R3_B_scaffold_161_21
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19477..19839)
DNA (363bp) protein (121aa)
SCN18_31_3_15_R3_B_scaffold_161_trna_1
unknown

Not on your lists

comp(20162..20233)
DNA (72bp)
transferRNA Thr
SCN18_31_3_15_R3_B_scaffold_161_22
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20284..20523
DNA (240bp) protein (80aa)
SCN18_31_3_15_R3_B_scaffold_161_23
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20478..20627)
DNA (150bp) protein (50aa)
SCN18_31_3_15_R3_B_scaffold_161_24
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20594..22390)
DNA (1797bp) protein (599aa)
X-Pro aminopeptidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D40D83
X-Pro aminopeptidase
X-Pro aminopeptidase {ECO:0000313|EMBL:AJP74739.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_161_25
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22474..23538
DNA (1065bp) protein (355aa)
Threonine aldolase family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UQD2_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP73986.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_161_26
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23542..23859)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630404
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT07215.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_31_3_15_R3_B_scaffold_161_27
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23984..24736
DNA (753bp) protein (251aa)
TonB-like protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630405
DNA, contig: SP624 {ECO:0000313|EMBL:GAN13732.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
energy transducer TonB
SCN18_31_3_15_R3_B_scaffold_161_28
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25233..25424)
DNA (192bp) protein (64aa)
SCN18_31_3_15_R3_B_scaffold_161_29
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25466..26008)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDD28
Putative lipoprotein {ECO:0000313|EMBL:EZP55557.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
Displaying items 1-30 of 108 in total

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