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SCN18_31_3_15_R3_B_scaffold_200

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Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R3_B_scaffold_200_1
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..677
DNA (675bp) protein (225aa)
RNA polymerase subunit sigma-70 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030F69CA
RNA polymerase subunit sigma-70
RNA polymerase subunit sigma-70 {ECO:0000313|EMBL:AJP72233.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_2
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

744..1259
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E425D3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP74445.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_3
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1329..2447
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000368DFD7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP72234.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_4
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2477..3154
DNA (678bp) protein (226aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165, ECO:0000313|EMBL:AJP72235.1}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
thymidylate kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A6D
thymidylate kinase
SCN18_31_3_15_R3_B_scaffold_200_5
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3236..4360
DNA (1125bp) protein (375aa)
fumarylacetoacetate hydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036BD07A
fumarylacetoacetate hydrolase
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:AJP72236.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_6
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4427..5206
DNA (780bp) protein (260aa)
3-oxoacyl-ACP reductase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A6B
3-oxoacyl-ACP reductase
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:AJP74446.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_7
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5210..6097
DNA (888bp) protein (296aa)
gluconolaconase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000309CF7E
gluconolaconase
Gluconolaconase {ECO:0000313|EMBL:AJP72237.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_8
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6171..6629
DNA (459bp) protein (153aa)
MarR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WF88_9SPHN
MarR family transcriptional regulator {ECO:0000313|EMBL:ENY82101.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCN18_31_3_15_R3_B_scaffold_200_9
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6673..7347)
DNA (675bp) protein (225aa)
GNAT family acetyltransferase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A05B
GNAT family acetyltransferase
GNAT family acetyltransferase {ECO:0000313|EMBL:AJP72240.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_10
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7394..9169)
DNA (1776bp) protein (592aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:AJP72241.1}; EC=4.2.1.9 {ECO:0000313|EMBL:AJP72241.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
dihydroxy-acid dehydratase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030AD501
SCN18_31_3_15_R3_B_scaffold_200_11
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9319..10743)
DNA (1425bp) protein (475aa)
major facilitator transporter n=1 Tax=Sphingomonas elodea RepID=UPI0002631A67
major facilitator transporter
Major facilitator transporter {ECO:0000313|EMBL:AJP72242.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_12
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10981..12072)
DNA (1092bp) protein (364aa)
LacI family transcription regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631A66
Periplasmic binding protein-like domain {ECO:0000313|EMBL:AGU11401.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
LacI-family transcriptional regulator
SCN18_31_3_15_R3_B_scaffold_200_13
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12213..14603
DNA (2391bp) protein (797aa)
glycoside hydrolase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A65
Glycoside hydrolase {ECO:0000313|EMBL:AJP72243.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glycoside hydrolase
SCN18_31_3_15_R3_B_scaffold_200_14
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14648..16312)
DNA (1665bp) protein (555aa)
Glycosyl hydrolases family 43 n=1 Tax=uncultured organism RepID=T1W9C7_9ZZZZ
xylan 1,4-beta-xylosidase
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:AJP74447.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_15
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16309..17814)
DNA (1506bp) protein (502aa)
Tryptophan halogenase n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3ASV6_9CAUL
Tryptophan halogenase {ECO:0000313|EMBL:GAD57803.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
tryptophan halogenase
SCN18_31_3_15_R3_B_scaffold_200_16
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17811..19328)
DNA (1518bp) protein (506aa)
Tryptophan halogenase n=1 Tax=uncultured organism RepID=T1W807_9ZZZZ
Tryptophan halogenase {ECO:0000313|EMBL:AGU11122.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
tryptophan halogenase
SCN18_31_3_15_R3_B_scaffold_200_17
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19325..20752)
DNA (1428bp) protein (476aa)
Tryptophan halogenase n=1 Tax=uncultured organism RepID=T1WBA0_9ZZZZ
Tryptophan halogenase {ECO:0000313|EMBL:AGU11405.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
tryptophan halogenase
SCN18_31_3_15_R3_B_scaffold_200_18
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20749..22203)
DNA (1455bp) protein (485aa)
Tryptophan halogenase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T4L9_CAUSK
tryptophan halogenase
Tryptophan halogenase {ECO:0000313|EMBL:ABZ70971.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_31_3_15_R3_B_scaffold_200_19
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22476..25808
DNA (3333bp) protein (1111aa)
TonB-dependent receptor n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3ASU3_9CAUL
TonB-dependent receptor
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCN18_31_3_15_R3_B_scaffold_200_20
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25865..26575)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W9N2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU11386.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCN18_31_3_15_R3_B_scaffold_200_21
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26629..27648
DNA (1020bp) protein (340aa)
Transcription factor jumonji jmjC domain protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T4M2_CAUSK
transcription factor jumonji domain-containing protein
Transcription factor jumonji jmjC domain protein {ECO:0000313|EMBL:ABZ70974.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_31_3_15_R3_B_scaffold_200_22
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27745..29901)
DNA (2157bp) protein (719aa)
Xylan alpha-1,2-glucuronidase {ECO:0000256|RuleBase:RU361198}; EC=3.2.1.131 {ECO:0000256|RuleBase:RU361198};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
alpha-glucuronidase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A62
alpha-glucuronidase
SCN18_31_3_15_R3_B_scaffold_200_23
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30034..31245
DNA (1212bp) protein (404aa)
bifunctional D-altronate/D-mannonate dehydratase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B40BE7
Starvation-sensing protein RspA {ECO:0000313|EMBL:GAM01814.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
bifunctional D-altronate/D-mannonate dehydratase
SCN18_31_3_15_R3_B_scaffold_200_24
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31262..32398
DNA (1137bp) protein (379aa)
Beta-xylanase {ECO:0000256|RuleBase:RU361174}; EC=3.2.1.8 {ECO:0000256|RuleBase:RU361174};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035E3DD1
glycosyl hydrolase
SCN18_31_3_15_R3_B_scaffold_200_25
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32480..33481
DNA (1002bp) protein (334aa)
aminoglycoside phosphotransferase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A60
aminoglycoside phosphotransferase
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:AJP72245.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_26
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33481..34404
DNA (924bp) protein (308aa)
6-phosphofructokinase isozyme 2 n=2 Tax=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) RepID=A0QZ99_MYCS2
phosphofructokinase
Phosphofructokinase {ECO:0000256|PIRNR:PIRNR000535, ECO:0000313|EMBL:AJP72246.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_27
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34383..34691)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003718555
ArsR family transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:AJP72247.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R3_B_scaffold_200_28
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34833..35405
DNA (573bp) protein (191aa)
2OG-Fe(II) oxygenase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESE9_METSB
2OG-Fe(II) oxygenase
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:ACK49839.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCN18_31_3_15_R3_B_scaffold_200_29
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35506..36747)
DNA (1242bp) protein (414aa)
Threonine synthase n=1 Tax=Sphingobium sp. AP49 RepID=J2DBY6_9SPHN
Threonine synthase {ECO:0000313|EMBL:EJK80247.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
threonine synthase
SCN18_31_3_15_R3_B_scaffold_200_30
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36752..37840)
DNA (1089bp) protein (363aa)
beta-lactamase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3AD
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AJP73060.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Displaying items 1-30 of 62 in total

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