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SCN18_31_3_15_R4_B_scaffold_1055

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_1055_1
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1088)
DNA (1086bp) protein (362aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
Acetate kinase n=1 Tax=Sphingobium baderi LL03 RepID=T0GL08_9SPHN
ackA; acetate kinase
SCN18_31_3_15_R4_B_scaffold_1055_2
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1463..1996)
DNA (534bp) protein (178aa)
Cytochrome B561 n=1 Tax=Methylotenera sp. (strain 301) RepID=D7DP76_METS0
Strain MEJ076 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIP97665.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
cytochrome B561
SCN18_31_3_15_R4_B_scaffold_1055_3
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2220..3482)
DNA (1263bp) protein (421aa)
Mn2+/Fe2_transporter, NRAMP family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YML0_9RHIZ
Mn2+/Fe2_transporter, NRAMP family {ECO:0000313|EMBL:EIM25202.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
manganese transport protein
SCN18_31_3_15_R4_B_scaffold_1055_4
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3659..4696)
DNA (1038bp) protein (346aa)
Alcohol dehydrogenase GroES domain-containing protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9P7_9RHIZ
Alcohol dehydrogenase {ECO:0000313|EMBL:KGE01616.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
alcohol dehydrogenase GroES domain-containing protein
SCN18_31_3_15_R4_B_scaffold_1055_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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4895..5758
DNA (864bp) protein (288aa)
Putative universal stress protein UspA-like n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZI84_AZOL4
Universal stress protein UspA {ECO:0000313|EMBL:KJR62701.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative universal stress protein UspA-like
SCN18_31_3_15_R4_B_scaffold_1055_6
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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comp(5748..7322)
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JW41_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78787.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_1055_7
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7433..7972)
DNA (540bp) protein (180aa)
Twin-arginine translocation pathway signal n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AD47_NITEC
Uncharacterized protein {ECO:0000313|EMBL:GAM98525.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
twin-arginine translocation pathway signal
SCN18_31_3_15_R4_B_scaffold_1055_8
SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8030..9589)
DNA (1560bp) protein (520aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CED1_9GAMM
Putative peptidoglycan-binding domain protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCN18_31_3_15_R4_B_scaffold_1055_9
SCN_Thiobacillus_53x, SCN_Thiobacillus_53x, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9595..10005)
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y771_9BURK
Translational machinery protein {ECO:0000313|EMBL:KJC48803.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_1055_10
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10002..10391)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AQD8_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCC99649.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCN18_31_3_15_R4_B_scaffold_1055_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10401..11264)
DNA (864bp) protein (288aa)
UspA domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HR32_PARL1
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ABS62365.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1055_12
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11270..11950)
DNA (681bp) protein (227aa)
Putative transcriptional regulator, Crp/Fnr family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUS0_PARL1
CRP/FNR family transcriptional regulator
Putative transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ABS63653.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1055_13
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12134..12553)
DNA (420bp) protein (140aa)
Response regulator receiver n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3STV2_NITWN
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ABA04289.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCN18_31_3_15_R4_B_scaffold_1055_14
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12617..13228)
DNA (612bp) protein (204aa)
Response regulator receiver protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUS2_PARL1
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABS63655.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1055_15
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13225..14364)
DNA (1140bp) protein (380aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUS3_PARL1
PAS/PAC sensor signal transduction histidine kinase
SCN18_31_3_15_R4_B_scaffold_1055_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14750..17014)
DNA (2265bp) protein (755aa)
Nitric-oxide reductase, quinol-dependent {ECO:0000313|EMBL:AJW29235.1}; EC=1.7.2.5 {ECO:0000313|EMBL:AJW29235.1};; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
Nitric-oxide reductase subunit B n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RR47_ALLVD
nitric-oxide reductase subunit B
SCN18_31_3_15_R4_B_scaffold_1055_17
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17152..17556)
DNA (405bp) protein (135aa)
Transposase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z9H4_9PROT
Transposase {ECO:0000313|EMBL:EME71045.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
SCN18_31_3_15_R4_B_scaffold_1055_18
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18003..18557)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZD7_9BRAD
resolvase domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EKS34576.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCN18_31_3_15_R4_B_scaffold_1055_19
unknown

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18644..18790
DNA (147bp) protein (49aa)

This feature has no annotations

SCN18_31_3_15_R4_B_scaffold_1055_20
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18823..19422)
DNA (600bp) protein (200aa)
Resolvase domain n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBZ2_XANP2
resolvase domain-containing protein
Resolvase domain {ECO:0000313|EMBL:ABS65535.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Displaying 20 items

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