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SCN18_31_3_15_R4_B_scaffold_1320

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_1320_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1242
DNA (1242bp) protein (414aa)
Metallophosphoesterase n=1 Tax=Pseudanabaena biceps PCC 7429 RepID=L8MTS8_9CYAN
Metallophosphoesterase {ECO:0000313|EMBL:ELS30836.1}; Flags: Precursor;; TaxID=927668 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena biceps PCC 7429.;"
metallophosphoesterase
SCN18_31_3_15_R4_B_scaffold_1320_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1387..6252
DNA (4866bp) protein (1622aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036659F9
Uncharacterized protein {ECO:0000313|EMBL:CDL00754.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
conserved Large extracellular alpha-helical protein of unknown function
SCN18_31_3_15_R4_B_scaffold_1320_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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6263..8368
DNA (2106bp) protein (702aa)
pbpC; Penicillin-binding protein 1C (PBP-1C); Penicillin-insensitive transglycosylase (Peptidoglycan TGase)(N-terminal); Transpeptidase-like module (C-terminal) (EC:2.4.2.-)
Penicillin-binding protein 1C (PBP-1C) Penicillin-insensitive transglycosylase (Peptidoglycan TGase)(N-terminal) Transpeptidase-like module (C-terminal) {ECO:0000313|EMBL:CDL00755.1}; EC=2.4.2.- {ECO:0000313|EMBL:CDL00755.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Penicillin-binding protein 1C (PBP-1C) Penicillin-insensitive transglycosylase (Peptidoglycan TGase)(N-terminal) Transpeptidase-like module (C-terminal) n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F5G6_9PROT
SCN18_31_3_15_R4_B_scaffold_1320_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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8580..9902
DNA (1323bp) protein (441aa)
Major facilitator superfamily transporter n=1 Tax=Oceanibaculum indicum P24 RepID=K2JLX4_9PROT
Multidrug-efflux transporter {ECO:0000313|EMBL:CDO58971.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
major facilitator superfamily transporter
SCN18_31_3_15_R4_B_scaffold_1320_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9903..11207)
DNA (1305bp) protein (435aa)
Putative murein transglycosylase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HX93_PSEUO
Murein transglycosylase {ECO:0000313|EMBL:KES20385.1}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
murein transglycosylase
SCN18_31_3_15_R4_B_scaffold_1320_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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11426..11551
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=1 Tax=Gluconobacter morbifer G707 RepID=G6XJM4_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCN18_31_3_15_R4_B_scaffold_1320_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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11616..12203
DNA (588bp) protein (196aa)
TPR repeat-containing protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUQ9_PARL1
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ABS63642.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1320_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12219..13643)
DNA (1425bp) protein (475aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Pyruvate kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR1_PARL1
pyruvate kinase
SCN18_31_3_15_R4_B_scaffold_1320_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13646..14008)
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R727_9RHOB
hypothetical protein
Protein containing DUF1036 {ECO:0000313|EMBL:AEV39268.1}; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
SCN18_31_3_15_R4_B_scaffold_1320_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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14143..15234
DNA (1092bp) protein (364aa)
N-formylglutamate amidohydrolase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR3_PARL1
N-formylglutamate amidohydrolase
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ABS63646.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1320_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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15309..15551
DNA (243bp) protein (81aa)
UPF0335 protein Plav_2034 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=Y2034_PARL1
hypothetical protein
UPF0335 protein Plav_2034 {ECO:0000255|HAMAP-Rule:MF_00797}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1320_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15579..15806)
DNA (228bp) protein (76aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUT1_PARL1
two component sigma-54 specific Fis family transcriptional regulator
Response regulatory protein {ECO:0000313|EMBL:GAN00523.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Displaying 12 items

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