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SCN18_31_3_15_R4_B_scaffold_1353

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_1353_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1..210
DNA (210bp) protein (70aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CDO61070.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
ATPase n=1 Tax=Afipia birgiae RepID=UPI0002D49751
nitrogen specific signal transduction histidine kinase NtrB
SCN18_31_3_15_R4_B_scaffold_1353_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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210..1655
DNA (1446bp) protein (482aa)
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXV3_PARL1
nitrogen metabolism transcriptional regulator NtrC
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family {ECO:0000313|EMBL:ABS64736.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1353_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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1795..4068
DNA (2274bp) protein (758aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXV2_PARL1
multi-sensor signal transduction histidine kinase
SCN18_31_3_15_R4_B_scaffold_1353_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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4037..5449
DNA (1413bp) protein (471aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXV1_PARL1
Nitrogen regulation protein NtrX {ECO:0000313|EMBL:CDO61073.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
two component sigma-54 specific Fis family transcriptional regulator
SCN18_31_3_15_R4_B_scaffold_1353_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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5490..6365
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000372562B
D-amino acid aminotransferase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_31_3_15_R4_B_scaffold_1353_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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6455..6703
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00036B5510
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hfq; RNA-binding protein Hfq
SCN18_31_3_15_R4_B_scaffold_1353_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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6724..8028
DNA (1305bp) protein (435aa)
GTPase HflX n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TZL0_9PROT
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
putative GTP-binding protein (hflX)
SCN18_31_3_15_R4_B_scaffold_1353_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8075..8923)
DNA (849bp) protein (283aa)
Nucleoside triphosphate pyrophosphohydrolase MazG (EC:3.6.1.8)
Nucleoside triphosphate pyrophosphohydrolase n=1 Tax=Citreicella sp. SE45 RepID=D0D2G9_9RHOB
Nucleoside triphosphate pyrophosphohydrolase {ECO:0000313|EMBL:EEX14940.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
SCN18_31_3_15_R4_B_scaffold_1353_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9181..9375
DNA (195bp) protein (65aa)
SCN18_31_3_15_R4_B_scaffold_1353_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9395..9814)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F8C2_DESDL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA69285.1}; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
SCN18_31_3_15_R4_B_scaffold_1353_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9842..10666)
DNA (825bp) protein (275aa)
Beta-lactamase-like protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HXT9_PARL1
Beta-lactamase-like protein {ECO:0000313|EMBL:GAK46751.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
metal-dependent hydrolases of the beta-lactamase superfamily I
SCN18_31_3_15_R4_B_scaffold_1353_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10677..11459)
DNA (783bp) protein (261aa)
yabD; metal-dependent DNase(yabD) (EC:3.1.21.-)
TatD family hydrolase n=1 Tax=Oceanibaculum indicum P24 RepID=K2K067_9PROT
TatD family hydrolase {ECO:0000313|EMBL:EKE70925.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
SCN18_31_3_15_R4_B_scaffold_1353_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11511..12563)
DNA (1053bp) protein (351aa)
DNA polymerase III subunit delta {ECO:0000313|EMBL:BAQ68446.1}; EC=2.7.7.7 {ECO:0000313|EMBL:BAQ68446.1};; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
DNA polymerase III subunit delta'''' n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B69861
DNA replication ATPase
SCN18_31_3_15_R4_B_scaffold_1353_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12563..13195)
DNA (633bp) protein (211aa)
Thymidylate kinase n=1 Tax=Caulobacter sp. AP07 RepID=J2GS82_9CAUL
thymidylate kinase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCN18_31_3_15_R4_B_scaffold_1353_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13192..14361)
DNA (1170bp) protein (390aa)
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CCQ73782.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CCQ73782.1};; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B522CB
SCN18_31_3_15_R4_B_scaffold_1353_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14384..15334)
DNA (951bp) protein (317aa)
Putative Rare lipoprotein A n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EYX1_9PROT
putative Rare lipoprotein A
Putative Rare lipoprotein A {ECO:0000313|EMBL:CDK98342.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Displaying 16 items

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