ggKbase home page

SCN18_31_3_15_R4_B_scaffold_1402

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_1402_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..156
DNA (156bp) protein (52aa)
aldo/keto reductase n=1 Tax=Oscillatoria sp. PCC 10802 RepID=UPI0003794F2F
Aldo/keto reductase {ECO:0000313|EMBL:KIF18109.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_1402_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(172..1917)
DNA (1746bp) protein (582aa)
Kef-type K+ transport system, predicted NAD-binding component n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HSA2_9RHIZ
Kef-type K+ transport system, predicted NAD-binding component {ECO:0000313|EMBL:EJN04008.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
sodium/hydrogen exchanger
SCN18_31_3_15_R4_B_scaffold_1402_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1984..2730)
DNA (747bp) protein (249aa)
Probable transcriptional regulatory protein Bra1253DRAFT_05853 n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QMS6_9BRAD
hypothetical protein
Probable transcriptional regulatory protein Bra1253DRAFT_05853 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCN18_31_3_15_R4_B_scaffold_1402_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2902..4371
DNA (1470bp) protein (490aa)
peptide transporter n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B558BB
amino acid/peptide transporter
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCN18_31_3_15_R4_B_scaffold_1402_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4563..5105
DNA (543bp) protein (181aa)
Alkyl hydroperoxide reductase protein C n=1 Tax=Rhodovulum sp. PH10 RepID=J6J7W1_9RHOB
Alkyl hydroperoxide reductase protein C {ECO:0000313|EMBL:EJW12030.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ahpC; alkylhydroperoxide reductase C
SCN18_31_3_15_R4_B_scaffold_1402_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5186..5737
DNA (552bp) protein (184aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000255|HAMAP-Rule:MF_01676}; EC=1.11.1.15 {ECO:0000255|HAMAP-Rule:MF_01676};; Alkylhydroperoxidase AhpD {ECO:0000255|HAMAP-Rule:MF_01676}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
Alkyl hydroperoxide reductase AhpD n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=AHPD_GLUDA
AhpD family alkylhydroperoxidase
SCN18_31_3_15_R4_B_scaffold_1402_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5792..6220)
DNA (429bp) protein (143aa)
Putative dioxygenase n=8 Tax=Bordetella RepID=K0MKK2_BORPB
lactoylglutathione lyase
Lactoylglutathione lyase {ECO:0000313|EMBL:AHX13890.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCN18_31_3_15_R4_B_scaffold_1402_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6410..7312
DNA (903bp) protein (301aa)
haloalkane dehalogenase (EC:3.8.1.5)
UPI0003D03EF1 related cluster n=1 Tax=unknown RepID=UPI0003D03EF1
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCN18_31_3_15_R4_B_scaffold_1402_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7462..8274)
DNA (813bp) protein (271aa)
Metallophosphoesterase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUZ3_PARL1
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ABS63726.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1402_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8302..8994
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003736C8A
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:KDR43211.1}; Uncharacterized protein {ECO:0000313|EMBL:CDY79303.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
isoprenylcysteine carboxyl methyltransferase family protein
SCN18_31_3_15_R4_B_scaffold_1402_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8967..9542)
DNA (576bp) protein (192aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
Antifreeze protein, type I : 5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FNW0_PHAMO
5-formyltetrahydrofolate cyclo-ligase
SCN18_31_3_15_R4_B_scaffold_1402_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9650..9829)
DNA (180bp) protein (60aa)
SCN18_31_3_15_R4_B_scaffold_1402_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9894..10259)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUZ1_PARL1
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_1402_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10275..10565)
DNA (291bp) protein (97aa)
SCN18_31_3_15_R4_B_scaffold_1402_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10854..12869
DNA (2016bp) protein (672aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
cbbT-1; transketolase 1 (EC:2.2.1.1)
Transketolase n=3 Tax=Ochrobactrum intermedium RepID=C4WHY3_9RHIZ
SCN18_31_3_15_R4_B_scaffold_1402_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12880..13887
DNA (1008bp) protein (336aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Methylopila sp. M107 RepID=UPI000370A39A
glyceraldehyde-3-phosphate dehydrogenase, type I
SCN18_31_3_15_R4_B_scaffold_1402_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13897..14973
DNA (1077bp) protein (359aa)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Phosphoglycerate kinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6INX1_9SPHN
Displaying 17 items

View Taxonomy