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SCN18_31_3_15_R4_B_scaffold_1575

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_1575_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..134)
DNA (132bp) protein (44aa)
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MNG0_9SPHN
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion {ECO:0000313|EMBL:CCW17018.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
cbb3-type cytochrome oxidase maturation protein
SCN18_31_3_15_R4_B_scaffold_1575_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(131..2371)
DNA (2241bp) protein (747aa)
FUPA27 P-type ATPase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MJT2_9SPHN
FUPA27 P-type ATPase {ECO:0000313|EMBL:CCW17019.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
heavy metal translocating P-type ATPase
SCN18_31_3_15_R4_B_scaffold_1575_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2384..3187)
DNA (804bp) protein (268aa)
cytochrome C oxidase subunit I n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489846
Uncharacterized protein {ECO:0000313|EMBL:AJW29224.1}; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_1575_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3202..3384)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489845
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86148.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_31_3_15_R4_B_scaffold_1575_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3381..4262)
DNA (882bp) protein (294aa)
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A7Z8_9SPHN
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
cbb3-type cytochrome c oxidase subunit III
SCN18_31_3_15_R4_B_scaffold_1575_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4253..4423)
DNA (171bp) protein (57aa)
Cytochrome c oxidase subunit CcoQ {ECO:0000313|EMBL:AJW29227.1}; EC=1.9.3.1 {ECO:0000313|EMBL:AJW29227.1};; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
Cbb3-type cytochrome oxidase component n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V794_SPHWW
Cbb3-type cytochrome oxidase component
SCN18_31_3_15_R4_B_scaffold_1575_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4429..5166)
DNA (738bp) protein (246aa)
Cytochrome c oxidase subunit CcoO {ECO:0000313|EMBL:AJW29228.1}; EC=1.9.3.1 {ECO:0000313|EMBL:AJW29228.1};; TaxID=908605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. NS2.;"
peptidase S41 n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489842
cbb3-type cytochrome c oxidase subunit II
SCN18_31_3_15_R4_B_scaffold_1575_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5173..6822)
DNA (1650bp) protein (550aa)
Cytochrome c oxidase subunit CcoN {ECO:0000313|EMBL:CCW17025.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CCW17025.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
cbb3-type cytochrome c oxidase subunit I (EC:1.9.3.1)
Cytochrome c oxidase subunit CcoN n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MIG6_9SPHN
SCN18_31_3_15_R4_B_scaffold_1575_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7104..7667)
DNA (564bp) protein (188aa)
Membrane protein {ECO:0000313|EMBL:KGI78579.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein id=5083697 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_1575_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7927..8382)
DNA (456bp) protein (152aa)
Aldehyde dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHT8_PHEZH
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:ACG79129.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCN18_31_3_15_R4_B_scaffold_1575_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8421..9965)
DNA (1545bp) protein (515aa)
AMP-dependent synthetase and ligase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRD8_PARL1
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABS62471.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1575_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10075..10947
DNA (873bp) protein (291aa)
Alpha/beta hydrolase fold n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQB9_PARL1
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:GAK45606.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
alpha/beta hydrolase fold protein
SCN18_31_3_15_R4_B_scaffold_1575_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10933..11538)
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQB5_PARL1
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABS62098.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1575_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11691..12065)
DNA (375bp) protein (125aa)
SCN18_31_3_15_R4_B_scaffold_1575_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12162..12761)
DNA (600bp) protein (200aa)
ThiJ/PfpI domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQB0_PARL1
ThiJ/PfpI domain-containing protein
ThiJ/PfpI domain protein {ECO:0000313|EMBL:ABS62093.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1575_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12787..13542)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8APT6_AZOBR
conserved protein of unknown function; putative methyltransferase and TPR domains
Uncharacterized protein {ECO:0000313|EMBL:CCD01259.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Displaying 16 items

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