ggKbase home page

SCN18_31_3_15_R4_B_scaffold_207

Search features with annotation key words

Displaying items 1-30 of 117 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_207_1
unknown

Not on your lists

1..339
DNA (339bp) protein (113aa)

This feature has no annotations

SCN18_31_3_15_R4_B_scaffold_207_2
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(624..1022)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DEK4_MYXXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF88470.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
SCN18_31_3_15_R4_B_scaffold_207_3
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(1000..1782)
DNA (783bp) protein (261aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026T0_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ82989.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_31_3_15_R4_B_scaffold_207_4
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1822..3054)
DNA (1233bp) protein (411aa)
Putative uncharacterized protein id=1912801 bin=GWE2_RBX1_39_32 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
putative signal transduction protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
SCN18_31_3_15_R4_B_scaffold_207_5
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3051..5456)
DNA (2406bp) protein (802aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SSI0_9DELT
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:EFI33646.1}; TaxID=555779 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae; Desulfonatronospira.;" source="Desulfonatronospira thiodismutans ASO3-1.;"
sensor histidine kinase
SCN18_31_3_15_R4_B_scaffold_207_6
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

Not on your lists

comp(5576..6676)
DNA (1101bp) protein (367aa)
4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27)
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:ABJ85131.1}; EC=1.13.11.27 {ECO:0000313|EMBL:ABJ85131.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YY4_SOLUE
SCN18_31_3_15_R4_B_scaffold_207_7
SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, Kapabacteria

Not on your lists

comp(6649..7770)
DNA (1122bp) protein (374aa)
aminotransferase (EC:2.6.1.-)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Histidinol-phosphate aminotransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YY5_SOLUE
SCN18_31_3_15_R4_B_scaffold_207_8
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7889..9469
DNA (1581bp) protein (527aa)
Oxidoreductase domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YR2_SOLUE
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ABJ85203.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_31_3_15_R4_B_scaffold_207_9
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9466..10395
DNA (930bp) protein (310aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027F7_SOLUE
xylose isomerase domain-containing protein
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ABJ82856.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_31_3_15_R4_B_scaffold_207_10
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

Not on your lists

10505..12313
DNA (1809bp) protein (603aa)
Tetratricopeptide TPR_4 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02B78_SOLUE
hypothetical protein
Tetratricopeptide TPR_4 {ECO:0000313|EMBL:ABJ81688.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_31_3_15_R4_B_scaffold_207_11
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

comp(12330..13652)
DNA (1323bp) protein (441aa)
SHNi-TPR family protein (Fragment) n=1 Tax=Lyngbya aestuarii BL J RepID=U7Q803_9CYAN
SHNi-TPR family protein {ECO:0000313|EMBL:ERT03918.1}; Flags: Fragment;; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_207_12
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(13814..17023)
DNA (3210bp) protein (1070aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000375B0F4
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABJ82766.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_31_3_15_R4_B_scaffold_207_13
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

17170..17958
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003747DD9
IclR family transcriptional regulator {ECO:0000313|EMBL:BAL53845.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
IclR family transcriptional regulator
SCN18_31_3_15_R4_B_scaffold_207_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18024..18770
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037C38C4
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEF61455.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
short-chain dehydrogenase/reductase SDR
SCN18_31_3_15_R4_B_scaffold_207_15
SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18857..21589
DNA (2733bp) protein (911aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003734B16
Tax=RBG_13_Planctomycetes_62_9_curated
SCN18_31_3_15_R4_B_scaffold_207_16
unknown

Not on your lists

21712..22155
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036E38FE
SCN18_31_3_15_R4_B_scaffold_207_17
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

Not on your lists

22133..22579
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036C6026
Tax=RIFOXYB2_FULL_RIF07_49_35_curated
SCN18_31_3_15_R4_B_scaffold_207_18
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

22599..23306
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035CE95B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ28772.1}; TaxID=1536769 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL P4-0081.;"
SCN18_31_3_15_R4_B_scaffold_207_19
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

23306..24151
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000380A3EE
amidohydrolase 2
Tax=CG_Arma_02
SCN18_31_3_15_R4_B_scaffold_207_20
CN-SCN_Cytophagaceae_12x, CN-SCN_Cytophagaceae_12x, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24181..25332)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003662FD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIQ14423.1}; TaxID=44251 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus durus (Paenibacillus azotofixans).;"
SCN18_31_3_15_R4_B_scaffold_207_21
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(25329..26345)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000373C080
deacylase
Putative deacylase {ECO:0000313|EMBL:AGA30240.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_31_3_15_R4_B_scaffold_207_22
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26338..27021)
DNA (684bp) protein (228aa)
cyclase
Predicted cyclase id=2171083 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_16_Armatimonadetes_58_9_curated
SCN18_31_3_15_R4_B_scaffold_207_23
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

27207..27677
DNA (471bp) protein (157aa)
Tax=CG_Anaero_04
SCN18_31_3_15_R4_B_scaffold_207_24
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27699..28190
DNA (492bp) protein (164aa)
CMP/dCMP deaminase, zinc-binding n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024I8_SOLUE
zinc-binding CMP/dCMP deaminase
CMP/dCMP deaminase, zinc-binding {ECO:0000313|EMBL:ABJ83588.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_31_3_15_R4_B_scaffold_207_25
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28275..29753
DNA (1479bp) protein (493aa)
Transcriptional regulator, GntR family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CB3_SOLUE
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABJ81303.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_31_3_15_R4_B_scaffold_207_26
SCNPILOT_EXPT_500_P_Chlamydiae_37_5_partial, SCNPILOT_EXPT_500_P_Chlamydiae_37_5_partial, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

29808..30695
DNA (888bp) protein (296aa)
pyridoxal biosynthesis lyase pdxS n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036C54FF
pyridoxal biosynthesis lyase PdxS
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
SCN18_31_3_15_R4_B_scaffold_207_27
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

30726..31292
DNA (567bp) protein (189aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000255|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000255|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000255|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000255|HAMAP-Rule:MF_01615}; EC=3.5.1.2 {ECO:0000255|HAMAP-Rule:MF_01615};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000374FA8A
glutamine amidotransferase subunit PdxT
SCN18_31_3_15_R4_B_scaffold_207_28
SCNPILOT_CONT_500_BF_Plasmid_72_74, SCNPILOT_CONT_500_BF_Plasmid_72_74, SCNPILOT_CONT_500_BF_Plasmid_72_74, SCNPILOT_CONT_500_BF_Plasmid_72_74, SCNPILOT_CONT_500_BF_Plasmid_72_74, Plasmid-like

Not on your lists

31339..31770
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000376BA77
protein tyrosine phosphatase
Protein tyrosine phosphatase {ECO:0000313|EMBL:ABJ81300.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCN18_31_3_15_R4_B_scaffold_207_trna_1
unknown

Not on your lists

31819..31902
DNA (84bp)
transferRNA Leu
SCN18_31_3_15_R4_B_scaffold_207_29
unknown

Not on your lists

32106..32234
DNA (129bp) protein (43aa)

This feature has no annotations

Displaying items 1-30 of 117 in total

View Taxonomy