ggKbase home page

scnpilot_p_inoc_sub60_scaffold_13_curated

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_sub60_scaffold_13_curated_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..2425
DNA (2424bp) protein (808aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003646E5F
signal transduction protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_2
unknown

Not on your lists

comp(2842..3615)
DNA (774bp) protein (258aa)

This feature has no annotations

scnpilot_p_inoc_sub60_scaffold_13_curated_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3725..5197)
DNA (1473bp) protein (491aa)
protease TldD n=1 Tax=Thiobacillus denitrificans RepID=UPI000366B750
putative modulator of DNA gyrase; K03568 TldD protein
Putative modulator of DNA gyrase {ECO:0000313|EMBL:AAZ96465.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_13_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5215..6162)
DNA (948bp) protein (316aa)
carbon-nitrogen hydrolase; K01501 nitrilase [EC:3.5.5.1]
apolipoprotein acyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037669B1
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6178..10011)
DNA (3834bp) protein (1278aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CA749
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96463.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_13_curated_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10092..10490)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003765AD0
RNA-binding S4 protein; K04762 ribosome-associated heat shock protein Hsp15
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10727..11425
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B63EA
Pirin domain-containing protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11468..12040
DNA (573bp) protein (191aa)
FMN reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AC09F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12487..13209)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E4412
Uncharacterized protein {ECO:0000313|EMBL:KIO49056.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
scnpilot_p_inoc_sub60_scaffold_13_curated_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13410..15254)
DNA (1845bp) protein (615aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361448D
serine protease
Serine protease, subtilase family {ECO:0000313|EMBL:AAZ96460.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_13_curated_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15736..17703)
DNA (1968bp) protein (656aa)
acetyl-CoA synthetase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1]
acetyl-CoA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037920D7
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17786..20509
DNA (2724bp) protein (908aa)
putative glutamate-ammonia-ligase adenylyltransferase (EC:2.7.7.42); K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
glutamine-synthetase adenylyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003710D6A
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_13
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20506..23148)
DNA (2643bp) protein (881aa)
cation-transporting ATPase, E1-E2 type (EC:3.6.3.8); K01537 Ca2+-transporting ATPase [EC:3.6.3.8]
ATPase n=1 Tax=Thiobacillus thioparus RepID=UPI000376E0A2
Tax=CG_Hydro_01
scnpilot_p_inoc_sub60_scaffold_13_curated_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23509..24405
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361D12B
uspA; universal stress protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24455..25531
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F3E22
thioredoxin-like protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25819..27183
DNA (1365bp) protein (455aa)
Transcriptional Regulator, Fis family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLG0_THIDA
Fis family transcriptional regulator
Transcriptional Regulator, Fis family {ECO:0000313|EMBL:AAZ96451.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_13_curated_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27417..28700
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P1N8_AROAE
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28776..29534)
DNA (759bp) protein (253aa)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29545..30228)
DNA (684bp) protein (228aa)
Putative bacteriocin processing protein,Peptidase C39 family, exported n=1 Tax=Ralstonia sp. PBA RepID=I9BY48_9RALS
putative bacteriocin processing protein, Peptidase C39 family, exported
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30238..30585)
DNA (348bp) protein (116aa)
signal peptide protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0002E895ED
signal peptide protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_21
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30643..32808)
DNA (2166bp) protein (722aa)
PE-PGRS family protein PE_PGRS56 (Fragment) n=2 Tax=Mycobacterium tuberculosis RepID=Q6MWW7_MYCTU
PE-PGRS family protein PE_PGRS56 {ECO:0000313|EMBL:CCP46334.1}; Flags: Fragment;; TaxID=83332 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv).;"
PE-PGRS family protein
scnpilot_p_inoc_sub60_scaffold_13_curated_22
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32894..35062)
DNA (2169bp) protein (723aa)
PE-PGRS FAMILY protein n=78 Tax=Mycobacterium RepID=L0NYE3_MYCTU
PE_PGRS55; PE-PGRS family protein
Transmembrane protein {ECO:0000313|EMBL:KFC73557.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
scnpilot_p_inoc_sub60_scaffold_13_curated_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35575..38373
DNA (2799bp) protein (933aa)
putative monovalent cation/H+ antiporter subunit A (EC:1.6.99.5); K05559 multicomponent K+:H+ antiporter subunit A
cation:proton antiporter n=1 Tax=Thiobacillus denitrificans RepID=UPI000367A2E8
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38373..38714
DNA (342bp) protein (114aa)
putative monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
Multicomponent K+:H+ antiporter subunit C id=1342798 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38711..40225
DNA (1515bp) protein (505aa)
putative monovalent cation/H+ antiporter subunit D (EC:1.6.99.5); K05561 multicomponent K+:H+ antiporter subunit D
cation:proton antiporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DF956
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40222..40713
DNA (492bp) protein (164aa)
Multicomponent K+:H+ antiporter subunit E id=1342796 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative monovalent cation/H+ antiporter subunit E; K05562 multicomponent K+:H+ antiporter subunit E
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40707..40976
DNA (270bp) protein (90aa)
cation:proton antiporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00038140C6
multisubunit Na+/H+ antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40986..41315
DNA (330bp) protein (110aa)
Na+/H+ antiporter subunit id=1342794 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative monovalent cation/H+ antiporter subunit G; K05564 multicomponent K+:H+ antiporter subunit G
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_13_curated_29
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41399..43942)
DNA (2544bp) protein (848aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035FA335
PAS/PAC-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ADC71542.1}; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
scnpilot_p_inoc_sub60_scaffold_13_curated_30
unknown

Not on your lists

comp(44019..44198)
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying items 1-30 of 34 in total

View Taxonomy