ggKbase home page

scnpilot_p_inoc_sub60_scaffold_24_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_sub60_scaffold_24_curated_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..649
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037798DE
CmpX protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(844..1689)
DNA (846bp) protein (282aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
RNA pseudouridine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003822297
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1736..2413)
DNA (678bp) protein (226aa)
chromosome segregation protein ScpB n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C0ACC
condensin subunit ScpB; K06024 segregation and condensation protein B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2394..3230)
DNA (837bp) protein (279aa)
segregation and condensation protein A n=1 Tax=Thiobacillus denitrificans RepID=UPI00036CBED9
condensin subunit ScpA; K05896 segregation and condensation protein A
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_5
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3572..3838)
DNA (267bp) protein (89aa)
Addiction module toxin, Txe/YoeB family n=4 Tax=root RepID=B5EPP7_ACIF5
Toxin of toxin-antitoxin (TA) system {ECO:0000313|EMBL:GAO36652.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
addiction module toxin, Txe/YoeB family
scnpilot_p_inoc_sub60_scaffold_24_curated_6
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3832..4077)
DNA (246bp) protein (82aa)
prevent-host-death family protein id=12496082 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
Antitoxin {ECO:0000313|EMBL:GAO36653.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
prevent-host-death family protein
scnpilot_p_inoc_sub60_scaffold_24_curated_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4227..6602)
DNA (2376bp) protein (792aa)
PIM1 peptidase (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Lon protease n=1 Tax=Thiobacillus denitrificans RepID=UPI000368420C
scnpilot_p_inoc_sub60_scaffold_24_curated_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6663..7439)
DNA (777bp) protein (259aa)
flagellar motor protein MotD n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EB053
flagellar motor protein MotD; K02557 chemotaxis protein MotB
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7439..8176)
DNA (738bp) protein (246aa)
flagellar motor protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00038245BC
motC; flagellar motor protein; K02556 chemotaxis protein MotA
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8158..8889)
DNA (732bp) protein (244aa)
flagellar biosynthesis sigma factor n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BB7F2
RNA polymerase sigma-70 factor; K02405 RNA polymerase sigma factor for flagellar operon FliA
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8893..9771)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DF87B
putative flagellar biosynthesis protein FlhG; K04562 flagellar biosynthesis protein FlhG
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9764..11035)
DNA (1272bp) protein (424aa)
flagellar biosynthesis regulator FlhF n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D35BF
flhF; flagellar biosynthesis regulator FlhF; K02404 flagellar biosynthesis protein FlhF
Putative flagellar biosynthetic protein FlhF {ECO:0000313|EMBL:AAZ97200.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_24_curated_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11032..13113)
DNA (2082bp) protein (694aa)
flagellar biosynthesis protein FlhA n=1 Tax=Thiobacillus denitrificans RepID=UPI00037DF65E
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:AAZ97199.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA
scnpilot_p_inoc_sub60_scaffold_24_curated_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13110..14252)
DNA (1143bp) protein (381aa)
flagellar biosynthesis protein FlhB n=1 Tax=Thiobacillus denitrificans RepID=UPI00036ADE0A
flagellar biosynthetic protein FlhB; K02401 flagellar biosynthetic protein FlhB
Flagellar biosynthetic protein FlhB {ECO:0000313|EMBL:AAZ97198.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_24_curated_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14401..15330)
DNA (930bp) protein (310aa)
flagellar motor protein MotB n=1 Tax=Thiobacillus denitrificans RepID=UPI0003739296
motB; flagellar motor protein MotB; K02557 chemotaxis protein MotB
Outer membrane chemotaxis MotB protein {ECO:0000313|EMBL:AAZ97197.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_24_curated_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15379..16239)
DNA (861bp) protein (287aa)
flagellar motor protein MotA n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A9490
flagellar motor protein MotA; K02556 chemotaxis protein MotA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16393..17151)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CEF9C
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17177..17731)
DNA (555bp) protein (185aa)
Flagellar transcriptional regulator FlhC id=1332265 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transcriptional activator FlhC; K02402 flagellar transcriptional activator FlhC
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17772..18089)
DNA (318bp) protein (106aa)
flagellar transcriptional regulator FlhD n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D9751
transcriptional activator FlhD; K02403 flagellar transcriptional activator FlhD
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18403..19824)
DNA (1422bp) protein (474aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
mannose-1-phosphate guanylyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036ECF75
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19846..20736)
DNA (891bp) protein (297aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase (DTDP-4-keto-L-rhamnose reductase) (DTDP-6-deoxy-L-mannose dehydrogenase) (DTDP-L-rhamnose synthetase) id=1332268 bin=GWE1_T_denit_62_9 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20733..21275)
DNA (543bp) protein (181aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase (DTDP-4-keto-6-deoxyglucose 3,5-epimerase) (DTDP-L-rhamnose synthetase) id=1332269 bin=GWE1_T_denit_62_9 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21275..22159)
DNA (885bp) protein (295aa)
Glucose-1-phosphate thymidylyltransferase id=1332270 bin=GWE1_T_denit_62_9 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glucose-1-phosphate thymidylyltransferase
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22156..23223)
DNA (1068bp) protein (356aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase id=1332271 bin=GWE1_T_denit_62_9 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23231..24082)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003640E80
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24376..24936)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003708CD7
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_24_curated_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25089..26900)
DNA (1812bp) protein (604aa)
ATP-dependent Clp protease ATP-binding subunit ClpA (EC:3.4.21.92); K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036F9170
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 27 items

View Taxonomy