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scnpilot_p_inoc_sub60_scaffold_55_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_sub60_scaffold_55_curated_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2..118
DNA (117bp) protein (39aa)
50S ribosomal protein L5 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RL5_THIDA
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


126..431
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Thiobacillus denitrificans RepID=UPI000363AC1B
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


444..839
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Thiobacillus thioparus RepID=UPI00037C5C8A
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


852..1382
DNA (531bp) protein (177aa)
50S ribosomal protein L6 n=1 Tax=Thiobacillus denitrificans RepID=UPI0003631E9D
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1399..1752
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037139B4
50S ribosomal protein L18P; K02881 large subunit ribosomal protein L18
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1768..2283
DNA (516bp) protein (172aa)
30S ribosomal protein S5 n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F082B
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_55_curated_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2287..2472
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D00D3
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2473..2907
DNA (435bp) protein (145aa)
50S ribosomal protein L15 n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FF3BF
50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2927..4240
DNA (1314bp) protein (438aa)
preprotein translocase subunit SecY n=1 Tax=Thiobacillus denitrificans RepID=UPI0003809AF1
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_55_curated_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4240..4458
DNA (219bp) protein (73aa)
translation initiation factor IF-1 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E74CA
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4503..4616
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=2 Tax=Thiomonas RepID=D5X638_THIK1
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4709..5065
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RS13_THIDA
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_55_curated_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5075..5467
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=Thiobacillus denitrificans RepID=UPI0003749699
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5482..6111
DNA (630bp) protein (210aa)
30S ribosomal protein S4 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036FF57C
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6155..7135
DNA (981bp) protein (327aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E7F40
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7236..7625
DNA (390bp) protein (130aa)
50S ribosomal protein L17 n=1 Tax=Thiobacillus denitrificans RepID=UPI000375CB3B
50S ribosomal protein L17P; K02879 large subunit ribosomal protein L17
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7772..8500
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000368F620
hypothetical protein; K09134 hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8507..9772)
DNA (1266bp) protein (422aa)
hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364073D
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9898..10221)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000377EBE0
lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10344..11078)
DNA (735bp) protein (245aa)
ribosomal large subunit pseudouridine synthase F (EC:5.4.99.-); K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
RNA pseudouridylate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003629F24
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11080..13902)
DNA (2823bp) protein (941aa)
excinuclease ABC subunit A n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C4B9D
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
scnpilot_p_inoc_sub60_scaffold_55_curated_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14002..15363
DNA (1362bp) protein (454aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D015B
major facilitator transporter
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_23

Not on your lists

15416..15904
DNA (489bp) protein (163aa)
single-stranded DNA-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BD88D
Single-strand DNA-binding {ECO:0000313|EMBL:EFK95146.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
single-strand binding protein; K03111 single-strand DNA-binding protein
scnpilot_p_inoc_sub60_scaffold_55_curated_24

Not on your lists

16037..17977
DNA (1941bp) protein (647aa)
TonB-dependent receptor, plug n=1 Tax=sediment metagenome RepID=D9PMS4_9ZZZZ
TonB-dependent receptor, plug {ECO:0000313|EMBL:EFK95147.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
hypothetical protein; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_sub60_scaffold_55_curated_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18137..18397
DNA (261bp) protein (87aa)
FmdB family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI000380C8AB
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18468..19070
DNA (603bp) protein (201aa)
membrane protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003751B52
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_55_curated_27

Not on your lists


19079..20362
DNA (1284bp) protein (428aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EFK95333.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EFK95333.1};; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
Aspartyl-tRNA synthetase n=1 Tax=sediment metagenome RepID=D9PM81_9ZZZZ
Displaying 27 items

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