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SCNpilot_cont_1000_bf_scaffold_1006

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1006_1
unknown

Not on your lists

comp(3..386)
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_2
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(386..1114)
DNA (729bp) protein (243aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PID0_9ZZZZ
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_1000_bf_scaffold_1006_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1125..2243)
DNA (1119bp) protein (373aa)
Putative phage tail fiber protein n=1 Tax=Celeribacter phage P12053L RepID=I6S6K3_9CAUD
Uncharacterized protein {ECO:0000313|EMBL:KEC73135.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1006_4
EBPR siphovirus 2, Caudovirales, Viruses

Not on your lists

comp(2272..2484)
DNA (213bp) protein (71aa)
Putative uncharacterized protein gp76 n=1 Tax=EBPR siphovirus 2 RepID=F8TV96_9CAUD
Putative uncharacterized protein gp76 {ECO:0000313|EMBL:AEI71092.1}; TaxID=1048521 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="EBPR siphovirus 2.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1006_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2539..3180)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AHI2_AZOBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCC99357.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_1000_bf_scaffold_1006_6
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3184..3507)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00036568CD
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_cont_1000_bf_scaffold_1006_7
unknown

Not on your lists

comp(3504..3737)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3808..4761)
DNA (954bp) protein (318aa)
hypothetical protein n=2 Tax=cellular organisms RepID=UPI0003625D5C rbh
putative phage Major head protein
Putative phage Major head protein {ECO:0000313|EMBL:CCC99360.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_1000_bf_scaffold_1006_9
Human herpesvirus 3, Varicellovirus, Herpesvirales, Viruses

Not on your lists

comp(4763..5821)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Bacteria RepID=UPI00036C59AD
ORF 11 {ECO:0000313|EMBL:AIT53385.1}; TaxID=10335 species="Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus.;" source="Human herpesvirus 3 (HHV-3) (Varicella-zoster virus).;"
peptidylprolyl cis-trans isomerase, FKBP-type domain containing protein
SCNpilot_cont_1000_bf_scaffold_1006_10
unknown

Not on your lists

comp(5866..6108)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6105..8180)
DNA (2076bp) protein (692aa)
hypothetical protein n=2 Tax=Bacteria RepID=UPI00036FCEB2 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCC99364.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_1000_bf_scaffold_1006_12
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8180..8404)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002F56DD4
Uncharacterized protein {ECO:0000313|EMBL:EXL09579.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_cont_1000_bf_scaffold_1006_13
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8485..9516)
DNA (1032bp) protein (344aa)
Phage terminase large subunit n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I5Q1_9BRAD rbh
Phage terminase large subunit {ECO:0000313|EMBL:EJN15803.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
phage terminase large subunit rbh
SCNpilot_cont_1000_bf_scaffold_1006_14
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9518..9988)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWZ9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGD06246.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1006_15
unknown

Not on your lists

comp(10290..10568)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_16
unknown

Not on your lists

10838..11824
DNA (987bp) protein (329aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_17

Not on your lists

comp(11659..12423)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Sulfitobacter phage pCB2047-A RepID=M4QM11_9VIRU
Uncharacterized protein {ECO:0000313|EMBL:AGH30751.1}; TaxID=754045 species="Viruses; dsDNA viruses, no RNA stage; unclassified dsDNA phages.;" source="Sulfitobacter phage pCB2047-A.;"
SCNpilot_cont_1000_bf_scaffold_1006_18
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12423..12920)
DNA (498bp) protein (166aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=DNAA_SPHAL
dnaA; chromosomal replication initiation protein; K02313 chromosomal replication initiator protein
Chromosomal replication initiator protein DnaA {ECO:0000255|HAMAP-Rule:MF_00377}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_cont_1000_bf_scaffold_1006_19

Not on your lists

comp(12917..13522)
DNA (606bp) protein (202aa)
MT-A70 family protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWU4_NITHN
Uncharacterized protein {ECO:0000313|EMBL:KKM78249.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
MT-A70 family protein
SCNpilot_cont_1000_bf_scaffold_1006_20
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13519..13935)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium 229E RepID=U4VAN0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ERL99776.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
VRR-NUC domain-containing protein
SCNpilot_cont_1000_bf_scaffold_1006_21
unknown

Not on your lists

comp(13951..14073)
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_22
unknown

Not on your lists

comp(14066..14218)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_23
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14253..15032)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI000370DE71
MT-A70 family protein
MT-A70 family protein {ECO:0000313|EMBL:AEH78722.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_cont_1000_bf_scaffold_1006_24
Bifidobacterium choerinum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15032..16027)
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI00036DE14B
Uncharacterized protein {ECO:0000313|EMBL:KFI57468.1}; TaxID=35760 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium choerinum.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1006_25
unknown

Not on your lists

comp(16024..16389)
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_26
unknown

Not on your lists

16684..17058
DNA (375bp) protein (125aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_27
unknown

Not on your lists

comp(16967..17227)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_28
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17398..17673
DNA (276bp) protein (92aa)
UPI0003CF3082 related cluster n=1 Tax=unknown RepID=UPI0003CF3082
Uncharacterized protein {ECO:0000313|EMBL:ESY75538.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_cont_1000_bf_scaffold_1006_29
unknown

Not on your lists

comp(17679..17888)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1006_30
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17983..18297
DNA (315bp) protein (105aa)
XRE family transcriptional regulator n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003AB3A36
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ACT58816.1}; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418).;"
Displaying items 1-30 of 48 in total

View Taxonomy