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SCNpilot_cont_1000_bf_scaffold_1087

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1087_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1135)
DNA (1134bp) protein (378aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L9_9BRAD
Nickel and cobalt resistance protein CnrA {ECO:0000313|EMBL:CEG06646.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
cnrA; RND divalent metal cation efflux transporter CnrA; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_1000_bf_scaffold_1087_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1081..1794)
DNA (714bp) protein (238aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L9_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig156, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52665.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
cnrA; RND divalent metal cation efflux transporter CnrA; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_1000_bf_scaffold_1087_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1798..3015)
DNA (1218bp) protein (406aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L8_9BRAD
Cation efflux system protein CzcB {ECO:0000313|EMBL:CEG06647.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_cont_1000_bf_scaffold_1087_4
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3050..3328)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52897.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein; K07807 hypothetical protein NreA
SCNpilot_cont_1000_bf_scaffold_1087_5
unknown

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comp(3389..3664)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1087_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3689..4966
DNA (1278bp) protein (426aa)
Cation diffusion facilitator family transporter n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4L5_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig156, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52668.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
cation diffusion facilitator family transporter
SCNpilot_cont_1000_bf_scaffold_1087_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5829..7175)
DNA (1347bp) protein (449aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
integral membrane sensor signal transduction histidine kinase; K07645 two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000381EC8D rbh
SCNpilot_cont_1000_bf_scaffold_1087_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7172..7837)
DNA (666bp) protein (222aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IE82_XANP2
Transcriptional regulator {ECO:0000313|EMBL:KIZ34115.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
two component transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_1087_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7939..9765
DNA (1827bp) protein (609aa)
Cytochrome c biogenesis protein, transmembrane region n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WQ7_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KIZ41889.1}; Flags: Fragment;; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
cytochrome c biogenesis protein, transmembrane region
SCNpilot_cont_1000_bf_scaffold_1087_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9793..10431
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NV04_AFIFE
DSBA oxidoreductase {ECO:0000313|EMBL:KIZ41890.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
thioredoxin domain-containing protein
SCNpilot_cont_1000_bf_scaffold_1087_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10579..11118
DNA (540bp) protein (180aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WQ5_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KIZ41891.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1087_12
unknown

Not on your lists

11166..11414
DNA (249bp) protein (83aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1087_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11351..12007)
DNA (657bp) protein (219aa)
Blr7895 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89CA2_BRADU
hypothetical protein
Blr7895 protein {ECO:0000313|EMBL:BAC53160.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_1000_bf_scaffold_1087_14
unknown

Not on your lists

12600..13181
DNA (582bp) protein (194aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1087_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13188..13667
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4P1_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig156, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52672.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1087_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13746..14039
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NCR8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:KIZ44778.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1087_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14049..15074
DNA (1026bp) protein (342aa)
Outer membrane efflux protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BQX3_OLICM
Copper resistance protein {ECO:0000313|EMBL:KIZ44779.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
outer membrane efflux protein
Displaying 17 items

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