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SCNpilot_cont_1000_bf_scaffold_1139

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1139_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(123..1895)
DNA (1773bp) protein (591aa)
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA {ECO:0000255|HAMAP-Rule:MF_01728}; EC=3.6.3.42 {ECO:0000255|HAMAP-Rule:MF_01728};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=NDVA_RHOPB
cyclic beta-1,2-glucan ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_cont_1000_bf_scaffold_1139_2
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1994..3064)
DNA (1071bp) protein (357aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SP58_NITWN
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein
Nitrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC33906.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_1000_bf_scaffold_1139_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3289..3711
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QH35_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KIZ33982.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1139_4
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3882..4175
DNA (294bp) protein (98aa)
his2; phosphoribosyl-ATP pyrophosphohydrolase; K01523 phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
Phosphoribosyl-ATP pyrophosphatase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QIG8_9BRAD
SCNpilot_cont_1000_bf_scaffold_1139_5
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4314..4895
DNA (582bp) protein (194aa)
DedA n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SP59_NITWN
hypothetical protein
DedA {ECO:0000313|EMBL:ABA05932.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_1000_bf_scaffold_1139_6
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4982..5677
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QIG6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG59572.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1139_7
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5632..6600
DNA (969bp) protein (323aa)
dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
Putative dioxygenase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EAM2_BRASB
Putative dioxygenase {ECO:0000313|EMBL:ABQ33216.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_1000_bf_scaffold_1139_8
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6791..7492
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EAN0_BRASB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ33224.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_1000_bf_scaffold_1139_9
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7936..9990
DNA (2055bp) protein (685aa)
Putative two-component sensor histidine kinase transcriptional regulatory protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GFW4_9BRAD rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:KJC58056.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
putative two-component sensor histidine kinase transcriptional regulatory protein rbh
SCNpilot_cont_1000_bf_scaffold_1139_10
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10096..10347
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TNX0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE08158.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1139_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10474..11142
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BF4_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD86282.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1139_12
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11200..12453)
DNA (1254bp) protein (418aa)
arsenic transporter n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000349C9AB
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
arsenical pump membrane protein; K03893 arsenical pump membrane protein rbh
SCNpilot_cont_1000_bf_scaffold_1139_13
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12507..13472)
DNA (966bp) protein (322aa)
Putative serine protease n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EB13_BRASB rbh
Signal protein PDZ {ECO:0000313|EMBL:KJC33762.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
serine protease rbh
SCNpilot_cont_1000_bf_scaffold_1139_14
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13757..15886
DNA (2130bp) protein (710aa)
Nitrite reductase, copper-containing protein {ECO:0000313|EMBL:EFI51166.1}; EC=1.7.2.1 {ECO:0000313|EMBL:EFI51166.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
aniA1; copper-containing nitrite reductase AniA (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1]
Nitrite reductase, copper-containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7F6_9BRAD
SCNpilot_cont_1000_bf_scaffold_1139_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15972..16529)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E8B228
HNH endonuclease
HNH endonuclease {ECO:0000313|EMBL:ABE64219.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1139_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16779..17549)
DNA (771bp) protein (257aa)
HhH-GPD; K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NU60_9BRAD
DNA-3-methyladenine glycosidase {ECO:0000313|EMBL:KIZ35134.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_1000_bf_scaffold_1139_17
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17586..18458
DNA (873bp) protein (291aa)
gltX; glutamyl-Q tRNA(Asp) synthetase; K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
Glutamyl-Q tRNA(Asp) synthetase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IGS3_9BRAD
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000313|EMBL:ERF81679.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_1000_bf_scaffold_1139_18
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18724..19080
DNA (357bp) protein (119aa)
Signal transduction histidine kinase {ECO:0000313|EMBL:ABA04014.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABA04014.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Signal transduction histidine kinase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUM7_NITWN
Signal transduction histidine kinase
SCNpilot_cont_1000_bf_scaffold_1139_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19056..19691
DNA (636bp) protein (212aa)
Histidine kinase {ECO:0000313|EMBL:ABE64214.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABE64214.1};; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Histidine kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHT3_NITHX
histidine kinase
SCNpilot_cont_1000_bf_scaffold_1139_20
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19743..20600)
DNA (858bp) protein (286aa)
Putative ribonuclease BN-like family transmembrane protein {ECO:0000313|EMBL:CCD90550.1}; EC=3.1.-.- {ECO:0000313|EMBL:CCD90550.1};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
ribonuclease BN-like family transmembrane protein (EC:3.1.-.-); K07058 membrane protein
Putative ribonuclease BN-like family transmembrane protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RTG2_9BRAD
SCNpilot_cont_1000_bf_scaffold_1139_21
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20776..20970
DNA (195bp) protein (65aa)
Hypoxia induced protein conserved region n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I2J5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJZ34713.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1139_22
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20998..21570
DNA (573bp) protein (191aa)
ATP:cob(I)alamin adenosyltransferase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NU65_9BRAD
ATP:cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:EKS32691.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative putative ATP/cob(I)alamin adenosyltransferase
SCNpilot_cont_1000_bf_scaffold_1139_23
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21844..22245
DNA (402bp) protein (134aa)
Electron transfer flavoprotein beta-subunit n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WT4_RHOPB
Bradyrhizobium elkanii strain UASWS1015 Contig167, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51032.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
Displaying 23 items

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