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SCNpilot_cont_1000_bf_scaffold_1180

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1180_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(59..583)
DNA (525bp) protein (175aa)
Putative bacteriophage-related protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WXH7_9BRAD
Putative bacteriophage-related protein {ECO:0000313|EMBL:EAQ35308.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
bacteriophage-like protein
SCNpilot_cont_1000_bf_scaffold_1180_2
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(588..1004)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X0U9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34140.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1180_3
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1189..1554)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Burkholderia multivorans ATCC BAA-247 RepID=J4JKU0_9BURK
Zinc metalloprotease protein {ECO:0000313|EMBL:ERK85938.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1180_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1551..4190)
DNA (2640bp) protein (880aa)
HsdR family type I site-specific deoxyribonuclease; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] rbh
HsdR family type I site-specific deoxyribonuclease n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G330_9GAMM rbh
HsdR family type I site-specific deoxyribonuclease {ECO:0000313|EMBL:EHH03927.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
SCNpilot_cont_1000_bf_scaffold_1180_5
Chlorobium phaeobacteroides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(4136..5407)
DNA (1272bp) protein (424aa)
restriction modification system DNA specificity domain; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Restriction modification system DNA specificity domain n=1 Tax=Chlorobium phaeobacteroides (strain BS1) RepID=B3ELH4_CHLPB
Restriction modification system DNA specificity domain {ECO:0000313|EMBL:ACE03303.1}; TaxID=331678 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium phaeobacteroides (strain BS1).;"
SCNpilot_cont_1000_bf_scaffold_1180_6
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5394..6284)
DNA (891bp) protein (297aa)
XRE family transcriptional regulator; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Transcriptional regulator, XRE family n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H242_METFK
XRE family transcriptional regulator {ECO:0000313|EMBL:KJS27563.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
SCNpilot_cont_1000_bf_scaffold_1180_7
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6281..7045)
DNA (765bp) protein (255aa)
N-6 DNA methylase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XZ39_RHIRD
XRE family transcriptional regulator {ECO:0000313|EMBL:KJS27563.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
N-6 DNA methylase
SCNpilot_cont_1000_bf_scaffold_1180_8
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7172..7468
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002375201
Uncharacterized protein {ECO:0000313|EMBL:KJS27562.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1180_9
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7471..8694
DNA (1224bp) protein (408aa)
Putative transcription regulator containing HTH domain n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RNK1_SYNP3 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS27561.1}; TaxID=1629720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
putative transcription regulator containing HTH domain rbh
SCNpilot_cont_1000_bf_scaffold_1180_10
unknown

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comp(9217..9444)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1180_11
unknown

Not on your lists

comp(9461..9631)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1180_12
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9885..10520
DNA (636bp) protein (212aa)
Integrase core domain containing protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X270_9BRAD rbh
Integrase core domain containing protein {ECO:0000313|EMBL:EAQ33669.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
integrase catalytic subunit
SCNpilot_cont_1000_bf_scaffold_1180_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11015..11386)
DNA (372bp) protein (124aa)
UPI0003CE2FE7 related cluster n=1 Tax=unknown RepID=UPI0003CE2FE7
Multidrug MFS transporter {ECO:0000313|EMBL:ESW80436.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
DsrE family protein; K06039 uncharacterized protein involved in oxidation of intracellular sulfur
SCNpilot_cont_1000_bf_scaffold_1180_14
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11415..11777)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2KYE6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDX16793.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein; K08982 putative membrane protein
SCNpilot_cont_1000_bf_scaffold_1180_15
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11808..13094)
DNA (1287bp) protein (429aa)
UPI0003CE7174 related cluster n=1 Tax=unknown RepID=UPI0003CE7174 rbh
MFS transporter {ECO:0000313|EMBL:ESY71303.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
putative major facilitator family transporter rbh
SCNpilot_cont_1000_bf_scaffold_1180_16
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13099..13839)
DNA (741bp) protein (247aa)
UPI0003CEF807 related cluster n=1 Tax=unknown RepID=UPI0003CEF807 rbh
Beta-lactamase {ECO:0000313|EMBL:ESW80433.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
metallo-beta-lactamase family protein
SCNpilot_cont_1000_bf_scaffold_1180_17
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13915..14583
DNA (669bp) protein (223aa)
UPI0003CF1DC0 related cluster n=1 Tax=unknown RepID=UPI0003CF1DC0 rbh
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator rbh
SCNpilot_cont_1000_bf_scaffold_1180_18
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14624..15442
DNA (819bp) protein (273aa)
UPI0003CE7594 related cluster n=1 Tax=unknown RepID=UPI0003CE7594 rbh
Uridine phosphorylase {ECO:0000313|EMBL:ESW80431.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
purine phosphorylase family 1
SCNpilot_cont_1000_bf_scaffold_1180_19
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15684..15938)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QTT8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG63194.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1180_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16982..17389
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4M7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52907.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1180_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17386..18837
DNA (1452bp) protein (484aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V745_9BRAD rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EFI51055.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
SCNpilot_cont_1000_bf_scaffold_1180_22
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18834..19445
DNA (612bp) protein (204aa)
Cation efflux system protein cusA n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z6T6_9BRAD
CusA; cation efflux system protein cusA
Cation efflux system protein cusA {ECO:0000313|EMBL:BAM88927.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_1000_bf_scaffold_1180_23
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19453..20832
DNA (1380bp) protein (460aa)
Cation efflux system protein cusA n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TYQ9_9BRAD
Cation efflux system protein cusA {ECO:0000313|EMBL:CCE11597.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
CusA; cation efflux system protein cusA
Displaying 23 items

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