ggKbase home page

SCNpilot_cont_1000_bf_scaffold_1216

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1216_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..936
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PC23_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37165.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K02557 chemotaxis protein MotB
SCNpilot_cont_1000_bf_scaffold_1216_2
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1170..1619
DNA (450bp) protein (150aa)
Putative acetyltransferase {ECO:0000313|EMBL:CCD97884.1}; EC=2.3.1.- {ECO:0000313|EMBL:CCD97884.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
acetyltransferase (EC:2.3.1.-); K03827 putative acetyltransferase [EC:2.3.1.-]
Putative acetyltransferase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SUK7_9BRAD
SCNpilot_cont_1000_bf_scaffold_1216_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1656..3542)
DNA (1887bp) protein (629aa)
ABC transporter, ATP-binding/permease protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WTM0_9BRAD
ABC transporter, ATP-binding/permease protein {ECO:0000313|EMBL:EAQ36735.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
ABC transporter ATP-binding/permease; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_cont_1000_bf_scaffold_1216_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3906..4433)
DNA (528bp) protein (176aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NY66_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09227.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1216_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4652..4963)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TZQ7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE11945.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1216_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5065..6063
DNA (999bp) protein (333aa)
Putative NADPH quinone oxidoreductase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NBB3_RHOPA rbh
NAD(P)H-quinone oxidoreductase {ECO:0000313|EMBL:KIZ34305.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
NADPH quinone oxidoreductase
SCNpilot_cont_1000_bf_scaffold_1216_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6308..9136
DNA (2829bp) protein (943aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07TV7_RHOP5
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ABJ04627.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_cont_1000_bf_scaffold_1216_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8998..9651)
DNA (654bp) protein (218aa)
UPF0301 protein RPC_0788 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Y788_RHOPB
hypothetical protein; K07735 putative transcriptional regulator
UPF0301 protein RPC_0788 {ECO:0000255|HAMAP-Rule:MF_00758}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1216_9
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9780..10619
DNA (840bp) protein (280aa)
Bll1491 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89UC6_BRADU
Uncharacterized protein {ECO:0000313|EMBL:KGJ65955.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1216_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10769..12133
DNA (1365bp) protein (455aa)
Polysaccharide biosynthesis protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHL5_NITHX
polysaccharide biosynthesis protein
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:ABE64282.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1216_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12234..13022)
DNA (789bp) protein (263aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] rbh
3-hydroxybutyrate dehydrogenase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NU00_9BRAD
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EKS32631.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_1000_bf_scaffold_1216_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13024..14211)
DNA (1188bp) protein (396aa)
Patatin n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHL3_NITHX
patatin; K07001 NTE family protein
Patatin {ECO:0000313|EMBL:ABE64284.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1216_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14324..14848)
DNA (525bp) protein (175aa)
Allergen V5/Tpx-1 related protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHL2_NITHX
Allergen V5/Tpx-1 related
Allergen V5/Tpx-1 related protein {ECO:0000313|EMBL:ABE64285.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1216_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14940..15659)
DNA (720bp) protein (240aa)
phosphoadenosine phosphosulfate reductase; K00390 phosphoadenosine phosphosulfate reductase [EC:1.8.4.8] rbh
Putative phosphoadenosine phosphosulfate reductase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NBS7_RHOPA rbh
Putative phosphoadenosine phosphosulfate reductase {ECO:0000313|EMBL:CAE26195.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_1000_bf_scaffold_1216_15
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15656..17089)
DNA (1434bp) protein (478aa)
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
Uroporphyrinogen-III C-methyltransferase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J0A1_RHOP2
Siroheme synthase {ECO:0000313|EMBL:KJC39339.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_1000_bf_scaffold_1216_16
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17233..18141
DNA (909bp) protein (303aa)
sulfate adenylyltransferase; K00957 sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] rbh
sulfate adenylyltransferase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000375E9AB rbh
PAPS reductase/FAD synthetase family protein {ECO:0000313|EMBL:EIG61016.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_cont_1000_bf_scaffold_1216_17
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18166..20079
DNA (1914bp) protein (638aa)
nodQ; NodQ bifunctional enzyme; K00955 bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25]
NodQ bifunctional enzyme n=1 Tax=Afipia birgiae RepID=UPI000370E60E
NodQ bifunctional enzyme {ECO:0000313|EMBL:BAR55879.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_1000_bf_scaffold_1216_18
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20380..21654
DNA (1275bp) protein (425aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
glcB; malate synthase G (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9]
malate synthase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000381C842
SCNpilot_cont_1000_bf_scaffold_1216_19
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21605..22351
DNA (747bp) protein (249aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
glcB; malate synthase G (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9]
Malate synthase G n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ERT2_BRASB
SCNpilot_cont_1000_bf_scaffold_1216_20
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22563..22718)
DNA (156bp) protein (52aa)
Uncharacterized protein n=4 Tax=Bradyrhizobium RepID=I0G0G9_9BRAD
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHR00683.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_1000_bf_scaffold_1216_21
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22848..23516)
DNA (669bp) protein (223aa)
16S rRNA (-2'-O)-methyltransferase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H2U8_9BRAD
hypothetical protein
16S rRNA (-2'-O)-methyltransferase {ECO:0000313|EMBL:ERF84097.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_1000_bf_scaffold_1216_22
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23767..23925
DNA (159bp) protein (53aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8NTX8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32611.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1216_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24066..24410
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNW0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30796.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1216_24
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24544..24990
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HH07_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF84093.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1216_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25178..25630)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B56282
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ05700.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_1216_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25872..26669)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20Z82_RHOPB
two-component response regulator
Uncharacterized protein {ECO:0000313|EMBL:ABD89554.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1216_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26906..27097
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037A3562
Uncharacterized protein {ECO:0000313|EMBL:KIZ39580.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1216_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27097..27648
DNA (552bp) protein (184aa)
RNA polymerase sigma factor n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20Z80_RHOPB rbh
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Displaying 28 items

View Taxonomy