ggKbase home page

SCNpilot_cont_1000_bf_scaffold_1298

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1298_1
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1885)
DNA (1884bp) protein (628aa)
nodulation protein n=1 Tax=Rhizobium loti RepID=UPI0003653A02
Multidrug resistance protein MdtC {ECO:0000313|EMBL:AID32201.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
acriflavin resistance protein; K07789 RND superfamily, multidrug transport protein MdtC
SCNpilot_cont_1000_bf_scaffold_1298_2
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2046..4646)
DNA (2601bp) protein (867aa)
multidrug transporter n=1 Tax=Rhizobium loti RepID=UPI00037852BA
AcrB/AcrD/AcrF family protein {ECO:0000313|EMBL:AID32200.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
acriflavin resistance protein; K07788 RND superfamily, multidrug transport protein MdtB
SCNpilot_cont_1000_bf_scaffold_1298_3
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4921..5892)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000380BF1F
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AID32199.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
secretion protein HlyD; K07799 putative multidrug efflux transporter MdtA
SCNpilot_cont_1000_bf_scaffold_1298_4
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6219..6752
DNA (534bp) protein (178aa)
UPI0003D04A51 related cluster n=1 Tax=unknown RepID=UPI0003D04A51
Fatty acid hydroxylase {ECO:0000313|EMBL:ESZ30010.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
fatty acid hydroxylase
SCNpilot_cont_1000_bf_scaffold_1298_5
unknown

Not on your lists

6938..7060
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1298_6
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7238..8041)
DNA (804bp) protein (268aa)
Transcriptional regulator, XRE family n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X4A8_OCHA4 rbh
XRE family transcriptional regulator rbh
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABS16062.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_1000_bf_scaffold_1298_7
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8153..8509
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A0M6_9PROT
Polyketide cyclase {ECO:0000313|EMBL:KHJ53606.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1298_8
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8658..8957
DNA (300bp) protein (100aa)
antibiotic biosynthesis monooxygenase n=1 Tax=Xanthomonas sacchari RepID=UPI000262AE3E
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:KHJ53605.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1298_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9118..9774
DNA (657bp) protein (219aa)
Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9TG47_9RALS
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:KIO48482.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
isoprenylcysteine carboxyl methyltransferase
SCNpilot_cont_1000_bf_scaffold_1298_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9982..10197
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLK3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62894.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1298_11
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10194..10688)
DNA (495bp) protein (165aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=2 Tax=Alicycliphilus denitrificans RepID=E8TTY5_ALIDB
alkyl hydroperoxide reductase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_cont_1000_bf_scaffold_1298_12
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10691..11284)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003658DD9
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCNpilot_cont_1000_bf_scaffold_1298_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11363..11941
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036AA84F
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABE61546.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1298_14
Pseudomonas sp. GM50, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11968..12621)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI0003667E5C rbh
Uncharacterized protein {ECO:0000313|EMBL:EJM63716.1}; TaxID=1144332 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM50.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_1298_15
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12658..13878)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IW62_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIF34964.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1298_16
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13981..14244
DNA (264bp) protein (88aa)
membrane protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B41320
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV12026.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_1000_bf_scaffold_1298_17
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14328..14906
DNA (579bp) protein (193aa)
2'-5' RNA ligase (EC:6.5.1.-); K01975 2'-5' RNA ligase [EC:6.5.1.-]
2''''-5'''' RNA ligase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034CD497
2'-5' RNA ligase {ECO:0000313|EMBL:ETR74852.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_1000_bf_scaffold_1298_18
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14984..15430
DNA (447bp) protein (149aa)
Homoprotocatechuate degradation operon regulator, HpaR n=1 Tax=Brucella inopinata BO1 RepID=E0DPX4_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:KFL28320.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
MarR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_1298_19
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15454..16260)
DNA (807bp) protein (269aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:EUB99183.1}; EC=4.2.1.80 {ECO:0000313|EMBL:EUB99183.1};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.1.1.77); K02509 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Rhizobium sp. CF080 RepID=J3CBN2_9RHIZ
SCNpilot_cont_1000_bf_scaffold_1298_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16257..16889)
DNA (633bp) protein (211aa)
UPI0003CEC5B2 related cluster n=1 Tax=unknown RepID=UPI0003CEC5B2
Putative 2-oxohepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:AHK45334.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
fumarylacetoacetate hydrolase family protein
Displaying 20 items

View Taxonomy