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SCNpilot_cont_1000_bf_scaffold_1396

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1396_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..328
DNA (327bp) protein (109aa)
TetR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI000318ADFE
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:EGP06744.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1396_2
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

817..1425
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D582_BRAJP
Signal peptide protein {ECO:0000313|EMBL:KJC49097.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1396_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1537..2664)
DNA (1128bp) protein (376aa)
adhI; S-(hydroxymethyl)glutathione dehydrogenase AdhI (EC:1.1.1.1 1.1.1.284); K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
Alcohol dehydrogenase class-3, S-(Hydroxymethyl)glutathione dehydrogenase AdhI {ECO:0000313|EMBL:AEI06976.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AEI06976.1};; EC=1.1.1.284 {ECO:0000313|EMBL:AEI06976.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Alcohol dehydrogenase class-3, S-(Hydroxymethyl)glutathione dehydrogenase AdhI n=2 Tax=Oligotropha carboxidovorans RepID=B6JF46_OLICO
SCNpilot_cont_1000_bf_scaffold_1396_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2855..3463
DNA (609bp) protein (203aa)
3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IB29_9BRAD
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJC62033.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1396_5
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3482..4945)
DNA (1464bp) protein (488aa)
deoxyribodipyrimidine photolyase (EC:4.1.99.3); K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
Deoxyribodipyrimidine photolyase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPR3_9BRAD
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KJC49101.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_1000_bf_scaffold_1396_6
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5130..5789)
DNA (660bp) protein (220aa)
alkyl hydroperoxide reductase (EC:1.11.1.7)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ABA04999.1}; EC=1.11.1.7 {ECO:0000313|EMBL:ABA04999.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRU2_NITWN
SCNpilot_cont_1000_bf_scaffold_1396_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6168..6761
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E2E0E6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFI50378.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_1000_bf_scaffold_1396_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6793..8832)
DNA (2040bp) protein (680aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N507_RHOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE28617.1}; Flags: Precursor;; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_1000_bf_scaffold_1396_9
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8980..9267)
DNA (288bp) protein (96aa)
Choline dehydrogenase n=1 Tax=gut metagenome RepID=J9BXG6_9ZZZZ
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_cont_1000_bf_scaffold_1396_10
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9290..10414
DNA (1125bp) protein (375aa)
acyl-CoA carboxylase biotin-carrying subunit; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
Biotin carboxylase / biotin carboxyl carrier protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EL80_BRASB
Bradyrhizobium elkanii strain UASWS1015 Contig183, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45760.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_1000_bf_scaffold_1396_11
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10423..11286
DNA (864bp) protein (288aa)
Oxaloacetate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01299}; EC=4.1.1.3 {ECO:0000256|HAMAP-Rule:MF_01299};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein; K01003 carboxyvinyl-carboxyphosphonate phosphorylmutase [EC:2.7.8.23]
Oxaloacetate decarboxylase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=OADC_RHOPB
SCNpilot_cont_1000_bf_scaffold_1396_12
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11288..11578
DNA (291bp) protein (97aa)
Acylphosphatase {ECO:0000313|EMBL:KJC62017.1}; EC=3.6.1.7 {ECO:0000313|EMBL:KJC62017.1};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Putative Acylphosphatase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T709_9BRAD
putative acylphosphatase
SCNpilot_cont_1000_bf_scaffold_1396_13
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11611..12336)
DNA (726bp) protein (242aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source=
lipB; lipoyltransferase; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
lipoate-protein ligase B n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037E082F
SCNpilot_cont_1000_bf_scaffold_1396_14
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12640..12825
DNA (186bp) protein (62aa)
Surface presentation of antigens (SPOA) protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLE0_NITHX
hypothetical protein; K02417 flagellar motor switch protein FliN/FliY
Surface presentation of antigens (SPOA) protein {ECO:0000313|EMBL:ABA04991.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_1000_bf_scaffold_1396_trna_1
unknown

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12914..12995
DNA (82bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_1396_15
unknown

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comp(13348..13479)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1396_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13616..13876)
DNA (261bp) protein (87aa)
Non-specific protein-tyrosine kinase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GV77_9BRAD
Non-specific protein-tyrosine kinase {ECO:0000313|EMBL:ERF81457.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1396_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14037..15365)
DNA (1329bp) protein (443aa)
Polysaccharide deacetylase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKM2_NITHX
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ABE63225.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1396_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15417..16241)
DNA (825bp) protein (275aa)
Polysaccharide deacetylase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKM3_NITHX
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ABE63224.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1396_19
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16386..16751
DNA (366bp) protein (122aa)
Transcriptional regulator, XRE family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WWV4_9BRAD
Transcriptional regulator, XRE family protein {ECO:0000313|EMBL:EAQ35537.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
XRE family transcriptional regulator; K07726 putative transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_1396_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16813..17634
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q211Q6_RHOPB rbh
Membrane protein {ECO:0000313|EMBL:KIZ34601.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_1396_21
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17625..17915)
DNA (291bp) protein (97aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P8I1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07164.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1396_22
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17971..18627
DNA (657bp) protein (219aa)
glutathione S-transferase; K04097 glutathione S-transferase [EC:2.5.1.18]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PH55_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS38865.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_1000_bf_scaffold_1396_23
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18939..19142
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035DE559
Branched-chain amino acid transport system permease {ECO:0000313|EMBL:ERF80732.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1396_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19631..20434
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q211R0_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88876.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1396_25
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20511..20987)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4W1_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK58534.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_1000_bf_scaffold_1396_26
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21155..21862
DNA (708bp) protein (236aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JR86_HYPDA rbh
Crp/Fnr family transcriptional regulator rbh
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ADJ24071.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_cont_1000_bf_scaffold_1396_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21994..22431
DNA (438bp) protein (146aa)
Uncharacterised conserved protein UCP032025 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q211R1_RHOPB
hypothetical protein
Uncharacterised conserved protein UCP032025 {ECO:0000313|EMBL:ABD88875.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1396_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22437..23288)
DNA (852bp) protein (284aa)
panC; pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
Pantothenate synthetase {ECO:0000255|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000255|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000255|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000255|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000255|HAMAP-Rule:MF_00158}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Pantothenate synthetase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=PANC_NITHX
Displaying 29 items

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