ggKbase home page

SCNpilot_cont_1000_bf_scaffold_1410

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1410_1
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..748)
DNA (747bp) protein (249aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
glpD; glycerol-3-phosphate dehydrogenase (EC:1.1.5.3); K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
sn-glycerol-3-phosphate dehydrogenase FAD/NAD(P)-binding (Aerobic) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TWX9_9BRAD
SCNpilot_cont_1000_bf_scaffold_1410_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(969..1409)
DNA (441bp) protein (147aa)
DeoR faimly transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F292E
DeoR family transcriptional regulator; K02444 DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:ABD86922.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1410_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1935..4142
DNA (2208bp) protein (736aa)
ATPase family protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BKJ3_OLICM rbh
ATPase family protein rbh
ATPase family protein {ECO:0000313|EMBL:AEI05366.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_bf_scaffold_1410_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4249..4947
DNA (699bp) protein (233aa)
Response regulator n=2 Tax=Oligotropha carboxidovorans RepID=B6JJK3_OLICO
response regulator protein
Response regulator protein {ECO:0000313|EMBL:AEI05365.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_bf_scaffold_1410_5
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5031..5420)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036D372E
Uncharacterized protein {ECO:0000313|EMBL:ETR76710.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1410_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5836..6048
DNA (213bp) protein (71aa)
transporter n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A0640
molybdenum-pterin-binding protein
Transporter {ECO:0000313|EMBL:KIZ38979.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_1000_bf_scaffold_1410_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6091..7134
DNA (1044bp) protein (348aa)
ABC transporter substrate-binding protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JBX4_OLICO rbh
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AEI07596.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_bf_scaffold_1410_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7143..8147
DNA (1005bp) protein (335aa)
ABC transporter permease protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JBX3_OLICO
ABC transporter permease; K02015 iron complex transport system permease protein
ABC transporter permease protein {ECO:0000313|EMBL:AEI07597.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_bf_scaffold_1410_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8232..8753
DNA (522bp) protein (174aa)
ABC transporter ATP-binding protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter ATP-binding protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JBX2_OLICO
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AEI07598.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_bf_scaffold_1410_10
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8800..9591)
DNA (792bp) protein (264aa)
Transcriptional regulator, GntR family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTK7_9BRAD rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCE09795.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
transcriptional regulator, GntR family rbh
SCNpilot_cont_1000_bf_scaffold_1410_11
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9753..12023
DNA (2271bp) protein (757aa)
Putative acyl-CoA dehydrogenase-like n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z426_9BRAD rbh
putative acyl-CoA dehydrogenase-like rbh
Putative acyl-CoA dehydrogenase-like {ECO:0000313|EMBL:BAM88138.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_1000_bf_scaffold_1410_12
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12050..13270
DNA (1221bp) protein (407aa)
Putative Formyl-coenzyme A transferase (Formyl-CoA transferase ) {ECO:0000313|EMBL:CCE09793.1}; EC=2.8.3.16 {ECO:0000313|EMBL:CCE09793.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Putative Formyl-coenzyme A transferase (Formyl-CoA transferase ) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTK5_9BRAD rbh
putative formyl-coenzyme A transferase rbh
SCNpilot_cont_1000_bf_scaffold_1410_13
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13282..14811)
DNA (1530bp) protein (510aa)
AMP-dependent synthetase and ligase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTK4_9BRAD rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:CCE09792.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
AMP-dependent synthetase and ligase rbh
SCNpilot_cont_1000_bf_scaffold_1410_14
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14906..16180)
DNA (1275bp) protein (425aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VH33_RHOPX
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC56180.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
branched chain amino-acid ABC transporter substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_1410_15
unknown

Not on your lists

16325..16435
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1410_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16457..17773
DNA (1317bp) protein (439aa)
Amidase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H981_9BRAD rbh
Dioxygenase {ECO:0000313|EMBL:KIZ40387.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
putative phthalate 4,5-dioxygenase oxygenase subunit rbh
SCNpilot_cont_1000_bf_scaffold_1410_17
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17782..18744
DNA (963bp) protein (321aa)
Vanillate monooxygenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IBP9_9BRAD rbh
Ferredoxin {ECO:0000313|EMBL:KJC56889.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
phenoxybenzoate dioxygenase subunit beta rbh
SCNpilot_cont_1000_bf_scaffold_1410_18
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18754..19173)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LBS8_RALME
nucleic-acid-binding protein; K07068
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_cont_1000_bf_scaffold_1410_19
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19173..20366)
DNA (1194bp) protein (398aa)
Thiolase family protein n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B8Y4_9BURK rbh
Thiolase family protein {ECO:0000313|EMBL:EED99756.1}; TaxID=513051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CGD1.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_1410_20
Desulfovibrio fructosivorans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20373..21575)
DNA (1203bp) protein (401aa)
ABC transporter substrate-binding protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI000366EE61
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EFL50736.1}; Flags: Precursor;; TaxID=596151 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio fructosivorans JJ.;"
ABC transporter substrate binding protein precursor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_1410_21
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21608..22318)
DNA (711bp) protein (237aa)
ABC transporter related n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IG12_XANP2
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ABS66955.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_1000_bf_scaffold_1410_22
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(22305..23039)
DNA (735bp) protein (245aa)
ABC transporter related protein n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RFJ6_ARCPA
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADB58890.1}; TaxID=572546 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 /; Av18).;"
SCNpilot_cont_1000_bf_scaffold_1410_23
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23036..23845)
DNA (810bp) protein (270aa)
Putative ABC transporter permiase component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AP91_AZOBR
putative ABC transporter permiase component
Putative ABC transporter permiase component {ECO:0000313|EMBL:CCD01064.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_1000_bf_scaffold_1410_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(23842..24744)
DNA (903bp) protein (301aa)
Inner-membrane translocator id=3635584 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative Branched-chain amino acid ABC transporter (permease protein); livH-like protein
Tax=GWC2_Rokubacteria_70_16_curated
SCNpilot_cont_1000_bf_scaffold_1410_25
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24956..26104
DNA (1149bp) protein (383aa)
Acyl-CoA dehydrogenase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QXK3_9BURK rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETF03759.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
putative acyl-CoA dehydrogenase fadE25 rbh
SCNpilot_cont_1000_bf_scaffold_1410_26
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26272..27045)
DNA (774bp) protein (258aa)
3-oxoacyl-(Acyl-carrier-protein) reductase (3-ketoacyl-acyl carrier protein reductase) {ECO:0000313|EMBL:CCE09809.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CCE09809.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-oxoacyl-(Acyl-carrier-protein) reductase (3-ketoacyl-acyl carrier protein reductase) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTM1_9BRAD rbh
SCNpilot_cont_1000_bf_scaffold_1410_27
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27086..28318)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z542_9BRAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAM88142.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_1000_bf_scaffold_1410_28
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28315..29202)
DNA (888bp) protein (296aa)
Putative coenzyme A transferase, subunit A n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z5D2_9BRAD rbh
putative coenzyme A transferase, subunit A rbh
Putative coenzyme A transferase, subunit A {ECO:0000313|EMBL:BAM88141.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_1000_bf_scaffold_1410_29
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29246..30040)
DNA (795bp) protein (265aa)
Putative 3-oxoadipate CoA-transferase subunit B (Beta-ketoadipate:succinyl-CoA transferase subunit B) (3-oxoadipate:succinyl-CoA transferase subunit B) {ECO:0000313|EMBL:CCE09797.1}; EC=2.8.3.6 {ECO:0000313|EMBL:CCE09797.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Putative 3-oxoadipate CoA-transferase subunit B (Beta-ketoadipate:succinyl-CoA transferase subunit B) (3-oxoadipate:succinyl-CoA transferase subunit B) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTK9_9BRAD rbh
putative 3-oxoadipate CoA-transferase subunit B rbh
SCNpilot_cont_1000_bf_scaffold_1410_30
unknown

Not on your lists

comp(30196..30330)
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying items 1-30 of 41 in total

View Taxonomy