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SCNpilot_cont_1000_bf_scaffold_1602

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1602_1
unknown

Not on your lists

2..148
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1602_2
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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672..1967
DNA (1296bp) protein (432aa)
Beta-lactamase hydrolase-like protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAL7_OLICO
beta-lactamase hydrolase-like protein
Beta-lactamase hydrolase-like protein {ECO:0000313|EMBL:AEI05009.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_bf_scaffold_1602_3
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1961..2305
DNA (345bp) protein (115aa)
ArsR family transcriptional regulator n=1 Tax=Ochrobactrum anthropi RepID=UPI000288D027
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ABS16037.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_1000_bf_scaffold_1602_4
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2302..2709
DNA (408bp) protein (136aa)
membrane protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA5C9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK62838.1}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
SCNpilot_cont_1000_bf_scaffold_1602_5
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2706..3146
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X485_OCHA4
hypothetical protein; K07112
Uncharacterized protein {ECO:0000313|EMBL:ABS16039.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_1000_bf_scaffold_1602_6
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3146..4198
DNA (1053bp) protein (351aa)
membrane protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003475D1A
Uncharacterized protein {ECO:0000313|EMBL:CCF20357.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein; K07090
SCNpilot_cont_1000_bf_scaffold_1602_7
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4207..4488
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Rhizobium phaseoli RepID=UPI00036D2400
Lon protein {ECO:0000313|EMBL:BAQ49542.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
ATPase AAA
SCNpilot_cont_1000_bf_scaffold_1602_8
unknown

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4485..4673
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1602_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4670..5434
DNA (765bp) protein (255aa)
Putative phosphoesterase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MFD4_RHISN
putative phosphoesterase
Putative phosphoesterase {ECO:0000313|EMBL:ACP25991.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_1000_bf_scaffold_1602_10
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6071..6931
DNA (861bp) protein (287aa)
Regulatory protein, LysR:LysR, substrate-binding n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U0N2_9PROT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDL00334.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_1602_11
Psychrobacter sp. G, Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6974..8605)
DNA (1632bp) protein (544aa)
Uncharacterized protein n=1 Tax=Psychrobacter sp. G RepID=S4YZQ3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:AGP50046.1}; TaxID=571800 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter sp. G.;"
choline transporter; K03451 betaine/carnitine transporter, BCCT family rbh
SCNpilot_cont_1000_bf_scaffold_1602_12
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8761..9537)
DNA (777bp) protein (259aa)
caiD; carnitinyl-CoA dehydratase (EC:4.2.1.-); K08299 carnitinyl-CoA dehydratase [EC:4.2.1.-]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00037DB045
Carnitinyl-CoA dehydratase {ECO:0000313|EMBL:ESZ29399.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
SCNpilot_cont_1000_bf_scaffold_1602_13
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9577..11205)
DNA (1629bp) protein (543aa)
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
AMP-dependent synthetase and ligase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVB4_RUBXD
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABG04664.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
SCNpilot_cont_1000_bf_scaffold_1602_14
unknown

Not on your lists

11938..12228
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1602_15
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12185..14044
DNA (1860bp) protein (620aa)
Resolvase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYM5_9BRAD
Resolvase {ECO:0000313|EMBL:EAQ34913.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
resolvase
SCNpilot_cont_1000_bf_scaffold_1602_16
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14121..14681)
DNA (561bp) protein (187aa)
UPI0003CF4136 related cluster n=1 Tax=unknown RepID=UPI0003CF4136
Cytochrome B561 {ECO:0000313|EMBL:ESY71355.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
cytochrome B561
SCNpilot_cont_1000_bf_scaffold_1602_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14687..14959)
DNA (273bp) protein (91aa)
UPI0003CE3297 related cluster n=1 Tax=unknown RepID=UPI0003CE3297
Uncharacterized protein {ECO:0000313|EMBL:CDX28529.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1602_18
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15134..15790
DNA (657bp) protein (219aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KHU5_MESAW
winged helix family two component transcriptional regulator
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:AGB44581.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_1000_bf_scaffold_1602_19
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15790..17145
DNA (1356bp) protein (452aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YDA4_MESOW
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_1000_bf_scaffold_1602_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17207..17749
DNA (543bp) protein (181aa)
ChrB domain-containing protein n=1 Tax=Afipia birgiae RepID=UPI000371F7F5 rbh
PaaX-like protein {ECO:0000313|EMBL:EJB03369.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
ChrB domain-containing protein rbh
SCNpilot_cont_1000_bf_scaffold_1602_21
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17751..18992
DNA (1242bp) protein (414aa)
Major facilitator superfamily MFS_1 n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EK23_9RHIZ
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCV04707.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
MFS-type transporter
SCNpilot_cont_1000_bf_scaffold_1602_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19064..19612
DNA (549bp) protein (183aa)
PAP2 superfamily protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9X3T5_RHILT
PAP2 superfamily protein {ECO:0000313|EMBL:EJB03371.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
PA-phosphatase-like phosphoesterase
SCNpilot_cont_1000_bf_scaffold_1602_23
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19625..21658
DNA (2034bp) protein (678aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031FF2A6
PA-phosphatase-like phosphoesterase rbh
Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:ACI54466.1}; Flags: Precursor;; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_cont_1000_bf_scaffold_1602_24
unknown

Not on your lists

21618..21818
DNA (201bp) protein (67aa)

This feature has no annotations

Displaying 24 items

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