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SCNpilot_cont_1000_bf_scaffold_1629

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1629_1
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..473
DNA (471bp) protein (157aa)
NAD(P)(+) transhydrogenase (EC:1.6.1.2); K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ERE9_BRASB
SCNpilot_cont_1000_bf_scaffold_1629_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

590..1681
DNA (1092bp) protein (364aa)
ionic transporter y4hA n=1 Tax=Afipia birgiae RepID=UPI0003677A16
Calcium/proton exchanger {ECO:0000313|EMBL:EKS37033.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ionic transporter; K07300 Ca2+:H+ antiporter
SCNpilot_cont_1000_bf_scaffold_1629_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1698..1985
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J060_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD06150.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_1629_4
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2165..2836
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ERE4_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ38738.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_1000_bf_scaffold_1629_5
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2968..3306)
DNA (339bp) protein (113aa)
30S ribosomal protein S21 n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QGI0_9BRAD
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_cont_1000_bf_scaffold_1629_6
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3350..4066
DNA (717bp) protein (239aa)
aquaporin n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003152D30
Aquaporin Z {ECO:0000256|HAMAP-Rule:MF_01146}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
aqpZ; aquaporin Z; K06188 aquaporin Z
SCNpilot_cont_1000_bf_scaffold_1629_7
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4144..5253)
DNA (1110bp) protein (370aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhiz
purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
Phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TYY0_9BRAD
SCNpilot_cont_1000_bf_scaffold_1629_8
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5250..5738)
DNA (489bp) protein (163aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000315C978
phosphoribosylaminoimidazole carboxylase catalytic subunit
SCNpilot_cont_1000_bf_scaffold_1629_9
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5996..6202)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYF6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34982.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1629_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6441..6626
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07J72_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ08012.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_1629_11
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6694..7797)
DNA (1104bp) protein (368aa)
Dehydrogenase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D8R4_BRAJP
Dehydrogenase {ECO:0000313|EMBL:AHY54227.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
dehydrogenase
SCNpilot_cont_1000_bf_scaffold_1629_12
unknown

Not on your lists

comp(8173..9048)
DNA (876bp) protein (292aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1629_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9236..10708
DNA (1473bp) protein (491aa)
diguanylate cyclase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003711D44
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ABD89481.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1629_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10860..12005
DNA (1146bp) protein (382aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Spermidine/putrescine ABC transporter ATP-binding subunit n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13B72_RHOPS
spermidine/putrescine ABC transporter ATP-binding subunit; K11076 putrescine transport system ATP-binding protein
SCNpilot_cont_1000_bf_scaffold_1629_15
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12007..12918
DNA (912bp) protein (304aa)
ABC transporter permease protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G104_9BRAD
ABC transporter permease; K11075 putrescine transport system permease protein
ABC transporter permease protein {ECO:0000313|EMBL:BAL74441.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_1000_bf_scaffold_1629_16
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12920..13531
DNA (612bp) protein (204aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W7K8_9BRAD
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJN14762.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
ABC transporter permease; K11074 putrescine transport system permease protein
SCNpilot_cont_1000_bf_scaffold_1629_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13546..15456)
DNA (1911bp) protein (637aa)
AsmA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNX5_NITHX
AsmA; K07289 AsmA protein
AsmA {ECO:0000313|EMBL:ABE62072.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1629_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15714..16418
DNA (705bp) protein (235aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5] rbh
3-oxoacid CoA-transferase, subunit A {ECO:0000313|EMBL:ABE38671.1}; EC=2.8.3.5 {ECO:0000313|EMBL:ABE38671.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
3-oxoacid CoA-transferase, subunit A n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13B68_RHOPS rbh
SCNpilot_cont_1000_bf_scaffold_1629_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16443..16943
DNA (501bp) protein (167aa)
3-oxoacid CoA-transferase subunit B (EC:2.8.3.5); K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B n=2 Tax=Bradyrhizobiaceae RepID=F7QFX5_9BRAD
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B {ECO:0000313|EMBL:EKS35195.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_1000_bf_scaffold_1629_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17133..17642)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNX2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62075.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1629_21
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17824..21192)
DNA (3369bp) protein (1123aa)
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20ZG8_RHOPB
Histidine kinase {ECO:0000313|EMBL:KJC43698.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
PAS/PAC sensor signal transduction histidine kinase
Displaying 21 items

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