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SCNpilot_cont_1000_bf_scaffold_1648

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1648_1
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..350)
DNA (348bp) protein (116aa)
Signal peptide peptidase SppA, 36K type n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KGX4_MESAW
signal peptide peptidase SppA, 36K type
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:AGB44256.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_1000_bf_scaffold_1648_2
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

554..1333
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DBC08F
Putative uncharacterized protein {ECO:0000313|EMBL:EHK59281.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
SCNpilot_cont_1000_bf_scaffold_1648_3
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1308..1988
DNA (681bp) protein (227aa)
UPI0003D06D3E related cluster n=1 Tax=unknown RepID=UPI0003D06D3E
Uncharacterized protein {ECO:0000313|EMBL:ESZ22220.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
OstA family protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_cont_1000_bf_scaffold_1648_4
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1990..2790
DNA (801bp) protein (267aa)
ABC transporter; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y4U4_9RHIZ
ABC transporter {ECO:0000313|EMBL:EHH13179.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_cont_1000_bf_scaffold_1648_5
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3138..4205
DNA (1068bp) protein (356aa)
Branched-chain amino acid transport system substrate-binding protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NZT5_AZOS1
putative branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
SCNpilot_cont_1000_bf_scaffold_1648_6
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4272..5144
DNA (873bp) protein (291aa)
Branched-chain amino acid transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P083_AZOS1 rbh
livH; branched-chain amino acid transport system permease protein; K01997 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_cont_1000_bf_scaffold_1648_7
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5141..6154
DNA (1014bp) protein (338aa)
Branched-chain amino acid transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P084_AZOS1
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:EWY39758.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
livM; branched-chain amino acid transport system permease protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_1000_bf_scaffold_1648_8
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6151..6891
DNA (741bp) protein (247aa)
ABC-type branched-chain amino acid transport systems, ATPase component n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W4G3_MAGSA
ABC-type branched-chain amino acid transport systems, ATPase component; K01995 branched-chain amino acid transport system ATP-binding protein
ABC-type branched-chain amino acid transport systems, ATPase component {ECO:0000313|EMBL:BAE51262.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
SCNpilot_cont_1000_bf_scaffold_1648_9
bacterium YEK0313, Bacteria

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6891..7595
DNA (705bp) protein (235aa)
Branched-chain amino acid transport ATP-binding protein LivF n=1 Tax=Rhodovulum sp. PH10 RepID=J6UAW7_9RHOB
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ10329.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative branched-chain amino acid ABC transporter, ATP-binding component (livF-like); K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_1000_bf_scaffold_1648_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7607..10756)
DNA (3150bp) protein (1050aa)
RND multidrug efflux transporter n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XW94_RHIRD
RND multidrug efflux transporter {ECO:0000313|EMBL:EHH05379.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
Putative component of multidrug efflux pump, acrB/acrD/acrF family
SCNpilot_cont_1000_bf_scaffold_1648_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10764..11951)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003136A95
RND transporter {ECO:0000313|EMBL:KAJ32296.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Putative component of multidrug efflux pump, acrB/acrD/acrF family
SCNpilot_cont_1000_bf_scaffold_1648_12
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12104..12703)
DNA (600bp) protein (200aa)
ribosylpyrimidine nucleosidase (EC:3.2.2.8)
Ribosylpyrimidine nucleosidase {ECO:0000313|EMBL:ADV10903.1}; EC=3.2.2.8 {ECO:0000313|EMBL:ADV10903.1};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Ribosylpyrimidine nucleosidase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCR1_MESCW
SCNpilot_cont_1000_bf_scaffold_1648_13
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12996..13421
DNA (426bp) protein (142aa)
UPI0003CF599A related cluster n=1 Tax=unknown RepID=UPI0003CF599A
Heat shock protein Hsp20 {ECO:0000313|EMBL:ESY77798.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
heat shock protein Hsp20
SCNpilot_cont_1000_bf_scaffold_1648_14
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13484..13741
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C107_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM75509.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1648_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13818..14282)
DNA (465bp) protein (155aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
nitrogen regulatory protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000379493B
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:EKF44404.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_cont_1000_bf_scaffold_1648_16
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14357..14941)
DNA (585bp) protein (195aa)
Sigma-54 modulation protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C110_9RHIZ
Sigma-54 modulation protein {ECO:0000313|EMBL:EIM75512.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
sigma-54 modulation protein
SCNpilot_cont_1000_bf_scaffold_1648_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15301..16800)
DNA (1500bp) protein (500aa)
UPI0003D06596 related cluster n=1 Tax=unknown RepID=UPI0003D06596
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor
SCNpilot_cont_1000_bf_scaffold_1648_18
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16973..17497)
DNA (525bp) protein (175aa)
HAD family hydrolase n=3 Tax=Ochrobactrum RepID=C4WLS6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFG68649.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
HAD family hydrolase
SCNpilot_cont_1000_bf_scaffold_1648_19
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17514..18353)
DNA (840bp) protein (280aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ49_9RHIZ rbh
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KFG68651.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
binding-protein-dependent transport systems inner membrane component rbh
SCNpilot_cont_1000_bf_scaffold_1648_20
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18350..19177)
DNA (828bp) protein (276aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X5A6_OCHA4 rbh
binding-protein-dependent transport systems inner membrane component rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABS16410.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_1000_bf_scaffold_1648_21
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19419..20201)
DNA (783bp) protein (261aa)
Extracellular solute-binding protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KBV4_9RHIZ
Extracellular solute-binding protein {ECO:0000313|EMBL:EMG52339.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
extracellular solute-binding protein
SCNpilot_cont_1000_bf_scaffold_1648_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20261..21439)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EE1BCB
Putative ATP-binding component of ABC transporter {ECO:0000313|EMBL:AHK45772.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ABC transporter rbh
SCNpilot_cont_1000_bf_scaffold_1648_23
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21709..22737
DNA (1029bp) protein (343aa)
UPI0003CE81BB related cluster n=1 Tax=unknown RepID=UPI0003CE81BB rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:ESY74161.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
LacI family transcriptional regulator rbh
SCNpilot_cont_1000_bf_scaffold_1648_24
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22748..23362)
DNA (615bp) protein (205aa)
transporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E0F3EA
Putative uncharacterized protein {ECO:0000313|EMBL:EHH13170.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
lysine exporter protein LysE/YggA
SCNpilot_cont_1000_bf_scaffold_1648_25
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23375..24280)
DNA (906bp) protein (302aa)
PfkB domain-containing protein; K00852 ribokinase [EC:2.7.1.15]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D3ACF
Ribokinase {ECO:0000313|EMBL:ESY07874.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
SCNpilot_cont_1000_bf_scaffold_1648_26
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24351..25232)
DNA (882bp) protein (294aa)
O6-methylguanine-DNA methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
6-O-methylguanine-DNA methyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031B42EA rbh
Methylated-DNA/protein-cysteinemethyltransferase {ECO:0000313|EMBL:CDX32530.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
SCNpilot_cont_1000_bf_scaffold_1648_27
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25339..25824)
DNA (486bp) protein (162aa)
UPI0003D05D88 related cluster n=1 Tax=unknown RepID=UPI0003D05D88
Membrane protein {ECO:0000313|EMBL:ESZ22232.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1648_28
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25846..26595
DNA (750bp) protein (250aa)
endonuclease III; K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
Endonuclease III n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WVA3_OCHA4
SCNpilot_cont_1000_bf_scaffold_1648_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26552..27298)
DNA (747bp) protein (249aa)
CysZ-like protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKK1_9RHIZ
CysZ-like protein {ECO:0000313|EMBL:EHK58699.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
CysZ-like protein; K06203 CysZ protein
SCNpilot_cont_1000_bf_scaffold_1648_30
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27377..27838)
DNA (462bp) protein (154aa)
UPI0003CF29E8 related cluster n=1 Tax=unknown RepID=UPI0003CF29E8
HTH-type transcriptional repressor NicR {ECO:0000313|EMBL:CDX34037.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
transcriptional regulator
Displaying items 1-30 of 35 in total

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