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SCNpilot_cont_1000_bf_scaffold_1651

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1651_1
unknown

Not on your lists

comp(46..594)
DNA (549bp) protein (183aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1651_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(823..2115)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QML9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62528.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1651_3
unknown

Not on your lists

comp(2176..2349)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1651_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2349..2558)
DNA (210bp) protein (70aa)
Phage transcriptional regulator, AlpA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLR6_NITHX
phage transcriptional regulator, AlpA
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:ABE62831.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1651_5
unknown

Not on your lists

comp(3045..3629)
DNA (585bp) protein (195aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1651_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3986..5077)
DNA (1092bp) protein (364aa)
ModE molybdate transport repressor domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PBN8_9BRAD
ModE molybdate transport repressor domain-containing protein {ECO:0000313|EMBL:EKS37030.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
formate dehydrogenase
SCNpilot_cont_1000_bf_scaffold_1651_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5564..7006
DNA (1443bp) protein (481aa)
DEAD/DEAH box helicase n=1 Tax=Afipia birgiae RepID=UPI0002FA1AD0
Uncharacterized protein {ECO:0000313|EMBL:EKS39738.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
DEAD/DEAH box helicase-like protein
SCNpilot_cont_1000_bf_scaffold_1651_8
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7091..8194
DNA (1104bp) protein (368aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAW3_9BRAD
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EKS39737.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K13590 diguanylate cyclase
SCNpilot_cont_1000_bf_scaffold_1651_9
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8718..9113)
DNA (396bp) protein (132aa)
HesB/YadR/YfhF n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZ81_9BRAD
HesB/YadR/YfhF; K13628 iron-sulfur cluster assembly protein
HesB/YadR/YfhF {ECO:0000313|EMBL:EAQ34711.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_1000_bf_scaffold_1651_10
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9571..9912)
DNA (342bp) protein (114aa)
Iron complex transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HM32_9BRAD
Iron complex transport system substrate-binding protein {ECO:0000313|EMBL:ERF85863.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1651_11
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9900..10187)
DNA (288bp) protein (96aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YJ54_9BRAD
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EHR03355.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1651_12
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10299..10940
DNA (642bp) protein (214aa)
nthA; nitrile hydratase subunit alpha (EC:4.2.1.84); K01721 nitrile hydratase [EC:4.2.1.84] rbh
Nitrile hydratase subunit alpha (Nitrilase) (NHase) {ECO:0000313|EMBL:CAL77610.1}; EC=4.2.1.84 {ECO:0000313|EMBL:CAL77610.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Nitrile hydratase subunit alpha (Nitrilase) (NHase) n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YUN4_BRASO rbh
SCNpilot_cont_1000_bf_scaffold_1651_13
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10940..11608
DNA (669bp) protein (223aa)
Nitrile hydratase subunit beta (Nitrilase) (NHase) {ECO:0000313|EMBL:CCE00467.1}; EC=4.2.1.84 {ECO:0000313|EMBL:CCE00467.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
Nitrile hydratase subunit beta (Nitrilase) (NHase) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T1Z0_9BRAD
nitrile hydratase subunit beta rbh
SCNpilot_cont_1000_bf_scaffold_1651_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11598..11984
DNA (387bp) protein (129aa)
Nitrile hydratase accessory protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P488_9BRAD
Nitrile hydratase accessory protein {ECO:0000313|EMBL:EKS37367.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1651_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12051..13469
DNA (1419bp) protein (473aa)
mazG; nucleoside triphosphate pyrophosphohydrolase (EC:3.6.1.19); K04765 ATP diphosphatase [EC:3.6.1.8]
MazG family protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM88_NITHX
MazG family protein {ECO:0000313|EMBL:ABE62659.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1651_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13609..14889)
DNA (1281bp) protein (427aa)
succinate-semialdehyde dehydrogenase (NAD(P)+) (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate semialdehyde dehydrogenase {ECO:0000313|EMBL:ABE62658.1}; EC=1.2.1.16 {ECO:0000313|EMBL:ABE62658.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Succinate semialdehyde dehydrogenase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM89_NITHX
SCNpilot_cont_1000_bf_scaffold_1651_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15012..16424)
DNA (1413bp) protein (471aa)
GTPase HflX n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214Q3_RHOPB rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
HSR1-like GTP-binding protein; K03665 GTP-binding protein HflX rbh
SCNpilot_cont_1000_bf_scaffold_1651_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16713..17570)
DNA (858bp) protein (286aa)
D-amino acid aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21]
D-amino-acid transaminase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PGI1_9BRAD rbh
D-amino-acid transaminase {ECO:0000313|EMBL:EKS39864.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_1000_bf_scaffold_1651_19
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17602..18972)
DNA (1371bp) protein (457aa)
Nitrogen assimilation regulatory protein ntrX n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HM23_9BRAD
Nitrogen assimilation regulatory protein ntrX {ECO:0000313|EMBL:ERF85853.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
two component sigma54 specific Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX
SCNpilot_cont_1000_bf_scaffold_1651_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18962..21271)
DNA (2310bp) protein (770aa)
multi-sensor signal transduction histidine kinase; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214Q7_RHOPB
SCNpilot_cont_1000_bf_scaffold_1651_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21439..22881)
DNA (1443bp) protein (481aa)
Nitrogen assimilation regulatory protein n=2 Tax=Bradyrhizobiaceae RepID=F7QN36_9BRAD rbh
Nitrogen assimilation regulatory protein {ECO:0000313|EMBL:EKS39965.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
SCNpilot_cont_1000_bf_scaffold_1651_22
unknown

Not on your lists

23251..23457
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1651_23
unknown

Not on your lists

23527..23739
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1651_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23880..24914)
DNA (1035bp) protein (345aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
tRNA-dihydrouridine synthase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003828A04
dihydrouridine synthase TIM-barrel protein NifR3 rbh
SCNpilot_cont_1000_bf_scaffold_1651_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25171..26379
DNA (1209bp) protein (403aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF {ECO:0000255|HAMAP-Rule:MF_01520}; Includes:; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; EC=2.7.7.60 {ECO:0000255|HAMAP-Rule:MF_01520};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000255|HAMAP-Rule:MF_01520}; MEP cytidylyltransferase {ECO:0000255|HAMAP-Rule:MF_01520}; Short=MCT {ECO:0000255|HAMAP-Rule:MF_01520};; Includes:; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_01520}; Shor
Bifunctional enzyme IspD/IspF n=2 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ISPDF_NITHX
SCNpilot_cont_1000_bf_scaffold_1651_26
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26382..26987
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DCH8_BRAJP rbh
hypothetical protein; K03743 rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL10519.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_1000_bf_scaffold_1651_27
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27155..27634)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PE83_9BRAD
Cyclase {ECO:0000313|EMBL:KJC53784.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1651_28
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27644..28603)
DNA (960bp) protein (320aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
radical SAM protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037F5485
SCNpilot_cont_1000_bf_scaffold_1651_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28945..29613
DNA (669bp) protein (223aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
3-methyladenine DNA glycosylase; K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21]
3-methyladenine DNA glycosylase n=1 Tax=Afipia birgiae RepID=UPI0002F8F653
SCNpilot_cont_1000_bf_scaffold_1651_30
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29564..30757)
DNA (1194bp) protein (398aa)
Major facilitator superfamily MFS_1 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMA4_NITHX rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABE62643.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying items 1-30 of 31 in total

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