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SCNpilot_cont_1000_bf_scaffold_1692

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1692_1
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..247
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IB49_9BRAD
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase {ECO:0000313|EMBL:KJC62077.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
MaoC-like dehydratase
SCNpilot_cont_1000_bf_scaffold_1692_2
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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394..1266
DNA (873bp) protein (291aa)
short-chain dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000362621F
Glutathione S-transferase {ECO:0000313|EMBL:ERF80799.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
short-chain dehydrogenase
SCNpilot_cont_1000_bf_scaffold_1692_3
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1274..2230
DNA (957bp) protein (319aa)
Putative dihydrodipicolinate synthetase {ECO:0000313|EMBL:CCE10307.1}; EC=4.3.3.7 {ECO:0000313|EMBL:CCE10307.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Putative dihydrodipicolinate synthetase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TV19_9BRAD
SCNpilot_cont_1000_bf_scaffold_1692_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2248..3048
DNA (801bp) protein (267aa)
NUDIX hydrolase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07KS8_RHOP5
NUDIX hydrolase {ECO:0000313|EMBL:KIZ43342.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
NUDIX hydrolase
SCNpilot_cont_1000_bf_scaffold_1692_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3343..5562
DNA (2220bp) protein (740aa)
Pyrrolo-quinoline quinone; K00114 alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8] rbh
Pyrrolo-quinoline quinone n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q135A3_RHOPS rbh
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:ABE40336.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_1692_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5768..7558
DNA (1791bp) protein (597aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLC7_NITHX
multi-sensor signal transduction histidine kinase
SCNpilot_cont_1000_bf_scaffold_1692_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7590..7940)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q211L9_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KIZ36210.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1692_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8101..8505)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLC9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62968.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1692_9
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8772..9029
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EJV8_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ36452.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_1000_bf_scaffold_1692_trna_1
unknown

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9109..9182
DNA (74bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_1692_10
unknown

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comp(9120..9317)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1692_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9506..10495)
DNA (990bp) protein (330aa)
ABC-type branched-chain amino acid transport systems, periplasmic component n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13DL9_RHOPS
ABC-type branched-chain amino acid transport systems, periplasmic component
ABC-type branched-chain amino acid transport systems, periplasmic component {ECO:0000313|EMBL:ABE37820.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_1692_12
CG_Dehalo_02, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

10633..12237
DNA (1605bp) protein (535aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C347_DESTA rbh
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II rbh
Tax=CG_Dehalo_02
SCNpilot_cont_1000_bf_scaffold_1692_13
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12351..12995
DNA (645bp) protein (215aa)
Transcriptional regulator, TetR family n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FDC6_DESAA
TetR family transcriptional regulator
Tax=BJP_IG2102_Syntrophobacterales_60_12
SCNpilot_cont_1000_bf_scaffold_1692_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13069..13881
DNA (813bp) protein (271aa)
enoyl-CoA hydratase (EC:4.2.1.17) rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:ABE37294.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ABE37294.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Enoyl-CoA hydratase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13F45_RHOPS rbh
SCNpilot_cont_1000_bf_scaffold_1692_15
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13920..14792
DNA (873bp) protein (291aa)
MaoC-like dehydratase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13DM1_RHOPS
Uncharacterized protein {ECO:0000313|EMBL:ETX00555.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
MaoC-like dehydratase
SCNpilot_cont_1000_bf_scaffold_1692_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14893..15396)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003493D6A
transcriptional regulator, MarR family
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AGU53526.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_1000_bf_scaffold_1692_17
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15555..15815
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TVT4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE10572.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein; K07045
Displaying 18 items

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