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SCNpilot_cont_1000_bf_scaffold_1698

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1698_1
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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604..876
DNA (273bp) protein (91aa)
transposase IS401 n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000376AD0D
Transposase {ECO:0000313|EMBL:ERF83873.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
tnp; transposase; K07497 putative transposase
SCNpilot_cont_1000_bf_scaffold_1698_2
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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898..1326
DNA (429bp) protein (143aa)
Transposase n=2 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QUT8_9BRAD
Transposase {ECO:0000313|EMBL:EIG63544.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
putative IS3 family transposase, IS51 group, OrfB
SCNpilot_cont_1000_bf_scaffold_1698_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1659..3368)
DNA (1710bp) protein (570aa)
Peptide/nickel transport system ATP-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HD65_9BRAD rbh
Peptide/nickel transport system ATP-binding protein {ECO:0000313|EMBL:ERF82723.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein; K02498 HemY protein
SCNpilot_cont_1000_bf_scaffold_1698_4
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3376..4563)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003660F17 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJC41875.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_1698_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4637..5398)
DNA (762bp) protein (254aa)
uroporphyrinogen III synthase HEM4; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen III synthase HEM4 n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07VK9_RHOP5
Uroporphyrinogen III synthase HEM4 {ECO:0000313|EMBL:ABJ04025.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_1698_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5400..5933)
DNA (534bp) protein (178aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000255|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000255|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=HMBS {ECO:0000255|HAMAP-Rule:MF_00260};; Pre-uroporphyrinogen synthase {ECO:0000255|HAMAP-Rule:MF_00260}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Porphobilinogen deaminase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=HEM3_NITHX
SCNpilot_cont_1000_bf_scaffold_1698_7
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5894..6181)
DNA (288bp) protein (96aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
Porphobilinogen deaminase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000255|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000255|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000255|HAMAP-Rule:MF_00260}; Short=HMBS {ECO:0000255|HAMAP-Rule:MF_00260};; Pre-uroporphyrinogen synthase {ECO:0000255|HAMAP-Rule:MF_00260}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Porphobilinogen deaminase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=HEM3_NITWN
SCNpilot_cont_1000_bf_scaffold_1698_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6258..7349
DNA (1092bp) protein (364aa)
gcp; putative DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_01445}; EC=2.3.1.234 {ECO:0000255|HAMAP-Rule:MF_01445};; N6-L-threonylcarbamoyladenine synthase {ECO:0000255|HAMAP-Rule:MF_01445}; Short=t(6)A synthase {ECO:0000255|HAMAP-Rule:MF_01445};; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000255|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000255|HAMAP-Rule:MF_01445}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteoba
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=TSAD_RHOPS
SCNpilot_cont_1000_bf_scaffold_1698_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7354..8343
DNA (990bp) protein (330aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94); K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000255|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000255|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00394}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=GPDA_NITHX
SCNpilot_cont_1000_bf_scaffold_1698_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8495..8707
DNA (213bp) protein (71aa)
DUF589 n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6ND56_RHOPA
hypothetical protein
DUF589 {ECO:0000313|EMBL:CAE25697.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_1000_bf_scaffold_1698_11
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8865..9563
DNA (699bp) protein (233aa)
SAM-dependent methyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QHG4_9BRAD
SAM-dependent methyltransferase {ECO:0000313|EMBL:EGP09453.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1698_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9783..10232
DNA (450bp) protein (150aa)
acetyl-CoA synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
Acetyl-coenzyme A synthetase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q781_RHOPT
SCNpilot_cont_1000_bf_scaffold_1698_13
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10229..11533
DNA (1305bp) protein (435aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
acetyl-CoA synthetase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1B0_9BRAD
SCNpilot_cont_1000_bf_scaffold_1698_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11952..12464
DNA (513bp) protein (171aa)
ErfK/YbiS/YcfS/YnhG n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D97_RHOPB
hypothetical protein
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:ABD85639.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1698_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12490..12999)
DNA (510bp) protein (170aa)
Nuclease (SNase-like) n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21DC8_RHOPB
nuclease
Nuclease (SNase-like) {ECO:0000313|EMBL:ABD85608.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1698_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13163..13366)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034B382C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE37954.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_1698_17
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13556..14899
DNA (1344bp) protein (448aa)
sun; SUN protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
SUN protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0FY93_9BRAD
SUN protein {ECO:0000313|EMBL:BAL73480.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_1000_bf_scaffold_1698_18
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15224..16624
DNA (1401bp) protein (467aa)
heparinase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036B128F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL73479.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_1000_bf_scaffold_1698_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16787..19840)
DNA (3054bp) protein (1018aa)
DNA polymerase I {ECO:0000313|EMBL:ABD90379.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABD90379.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WV7_RHOPB
SCNpilot_cont_1000_bf_scaffold_1698_20
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19909..20964)
DNA (1056bp) protein (352aa)
Acyltransferase 3 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SVR6_NITWN
acyltransferase
Acyltransferase 3 {ECO:0000313|EMBL:ABA03625.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_1000_bf_scaffold_1698_21
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21114..23612
DNA (2499bp) protein (833aa)
ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
ATP-dependent helicase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003648201
ATP-dependent helicase {ECO:0000313|EMBL:KJC39116.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_1000_bf_scaffold_1698_22
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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23869..24396
DNA (528bp) protein (176aa)
Bll8127 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89BM1_BRADU
hypothetical protein; K06985 aspartyl protease family protein
Bll8127 protein {ECO:0000313|EMBL:BAC53392.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_1000_bf_scaffold_1698_23
unknown

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24541..24615
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 23 items

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