ggKbase home page

SCNpilot_cont_1000_bf_scaffold_1702

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1702_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..2030
DNA (2028bp) protein (676aa)
Selenocysteine-specific elongation factor SelB n=2 Tax=Oligotropha carboxidovorans RepID=B6JC82_OLICO
selB; selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor
Selenocysteine-specific elongation factor SelB {ECO:0000313|EMBL:AEI07496.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_bf_scaffold_1702_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1984..2310
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2X0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07221.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1702_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2294..2698
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JC84_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07494.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_bf_scaffold_1702_4
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2848..3897)
DNA (1050bp) protein (350aa)
selD; selenophosphate synthase SelD (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3]
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
Selenide, water dikinase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W8_9BRAD
SCNpilot_cont_1000_bf_scaffold_1702_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4272..5822)
DNA (1551bp) protein (517aa)
acyl-CoA synthetase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QDD6_RHOPT
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACF03796.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_1000_bf_scaffold_1702_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6166..7860
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034CB15F
Uncharacterized protein {ECO:0000313|EMBL:EKS41091.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1702_7
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7905..10013
DNA (2109bp) protein (703aa)
dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037E2317
Urease subunit alpha {ECO:0000313|EMBL:ERF85481.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
oxidoreductase rbh
SCNpilot_cont_1000_bf_scaffold_1702_8
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10013..11092
DNA (1080bp) protein (360aa)
3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036D0BC0
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:KJC60833.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_1000_bf_scaffold_1702_9
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11126..11497
DNA (372bp) protein (124aa)
NAD-dependent alcohol dehydrogenase (EC:1.1.1.1); K00001 alcohol dehydrogenase [EC:1.1.1.1]
Putative NAD-dependent alcohol dehydrogenase {ECO:0000313|EMBL:CAL76280.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CAL76280.1};; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Putative NAD-dependent alcohol dehydrogenase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YQV4_BRASO
SCNpilot_cont_1000_bf_scaffold_1702_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11497..11982
DNA (486bp) protein (162aa)
alcohol dehydrogenase GroES-like protein; K00001 alcohol dehydrogenase [EC:1.1.1.1]
Putative NAD-dependent alcohol dehydrogenase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TDX7_9BRAD
Alcohol dehydrogenase {ECO:0000313|EMBL:KIZ48044.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_1000_bf_scaffold_1702_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12017..13807)
DNA (1791bp) protein (597aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036DED9A rbh
Cl-channel, voltage gated; K03281 chloride channel protein, CIC family rbh
Cl-channel, voltage gated {ECO:0000313|EMBL:ABD08757.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_1702_12
unknown

Not on your lists

comp(13990..14079)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1702_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14091..14939)
DNA (849bp) protein (283aa)
Beta-lactamase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJW4_NITHX
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ABE63483.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1702_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15050..15901
DNA (852bp) protein (284aa)
Aldo/keto reductase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138P3_RHOPS rbh
aldo/keto reductase rbh
Aldo/keto reductase {ECO:0000313|EMBL:ABE39446.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_1702_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16013..16984
DNA (972bp) protein (324aa)
S-adenosylmethionine uptake transporter n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HHT9_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46476.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_cont_1000_bf_scaffold_1702_16
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17016..17477)
DNA (462bp) protein (154aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D4F6_BRAJP
transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:KGT79052.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_cont_1000_bf_scaffold_1702_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17614..18174
DNA (561bp) protein (187aa)
transketolase, central region; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
Transketolase, central region n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q138P0_RHOPS
Displaying 17 items

View Taxonomy