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SCNpilot_cont_1000_bf_scaffold_1821

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1821_1
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..90
DNA (90bp) protein (30aa)
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037DC2BD
Putative ATP-dependent DNA ligase {ECO:0000313|EMBL:KGJ65599.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_cont_1000_bf_scaffold_1821_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

181..483
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BB3_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KIZ39495.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1821_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

500..1831
DNA (1332bp) protein (444aa)
MATE efflux family protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BB2_RHOPB
MATE efflux family protein; K03327 multidrug resistance protein, MATE family
MATE efflux family protein {ECO:0000313|EMBL:ABD86324.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1821_4
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1967..3058)
DNA (1092bp) protein (364aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
diguanylate cyclase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FB6271
SCNpilot_cont_1000_bf_scaffold_1821_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3058..3402)
DNA (345bp) protein (115aa)
glutathione S-transferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037A88E8
Uncharacterized protein {ECO:0000313|EMBL:CCE12243.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1821_6
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3727..4353
DNA (627bp) protein (209aa)
Peptidase S24 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRC3_9BRAD
Peptidase S24 {ECO:0000313|EMBL:EAQ37462.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
peptidase S24
SCNpilot_cont_1000_bf_scaffold_1821_7
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4438..5289
DNA (852bp) protein (284aa)
membrane protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000314175C rbh
Membrane protein {ECO:0000313|EMBL:KFG68303.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1821_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5323..6954)
DNA (1632bp) protein (544aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
lysK; lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NXY0_9BRAD
SCNpilot_cont_1000_bf_scaffold_1821_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7010..7843)
DNA (834bp) protein (278aa)
Amino acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRP5_NITHX
extracellular solute-binding protein
Amino acid ABC transporter substrate-binding protein, PAAT family {ECO:0000313|EMBL:ABE61102.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1821_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7937..9919
DNA (1983bp) protein (661aa)
glycosyl transferase family 2 n=1 Tax=Afipia birgiae RepID=UPI00036BD466
Putative glycosyl transferase {ECO:0000313|EMBL:EGP09120.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
glycosyl transferase family 2 protein
SCNpilot_cont_1000_bf_scaffold_1821_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9903..10499)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HFY5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF83703.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
cytochrome C oxidase assembly factor transmembrane protein; K07152 rbh
SCNpilot_cont_1000_bf_scaffold_1821_12
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10700..11158)
DNA (459bp) protein (153aa)
signal peptide protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000377702B
Uncharacterized protein {ECO:0000313|EMBL:EJZ28835.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1821_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11252..12964
DNA (1713bp) protein (571aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DPA0_BRAJP
Putative FAD-binding dehydrogenase {ECO:0000313|EMBL:BAR56435.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein; K07077
SCNpilot_cont_1000_bf_scaffold_1821_14
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13055..13420
DNA (366bp) protein (122aa)
SnoaL-like polyketide cyclase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QLT1_9BRAD
SnoaL-like polyketide cyclase {ECO:0000313|EMBL:EIG60737.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1821_15
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13541..14707)
DNA (1167bp) protein (389aa)
oxidoreductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035C641D
NADH:flavin oxidoreductase / NADH oxidase {ECO:0000313|EMBL:KJC57555.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
NADH:flavin oxidoreductase
SCNpilot_cont_1000_bf_scaffold_1821_16
Serratia fonticola, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14765..15520)
DNA (756bp) protein (252aa)
Hydrolase (HAD superfamily) n=1 Tax=Serratia fonticola AU-AP2C RepID=U2N9E0_SERFO rbh
Alpha/beta hydrolase {ECO:0000313|EMBL:AKG71471.1}; TaxID=47917 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia fonticola.;"
alpha/beta hydrolase
SCNpilot_cont_1000_bf_scaffold_1821_17
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15553..17223)
DNA (1671bp) protein (557aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D493A4 rbh
Cyclohexanone monooxygenase {ECO:0000313|EMBL:KJC61083.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
phenylacetone monooxygenase rbh
SCNpilot_cont_1000_bf_scaffold_1821_18
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17462..19570
DNA (2109bp) protein (703aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CBCAD
Uncharacterized protein {ECO:0000313|EMBL:AHB48591.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1821_trna_1
unknown

Not on your lists

comp(19736..19806)
DNA (71bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_1821_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19916..20515)
DNA (600bp) protein (200aa)
cation transporter n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036D0629
Cation transporter {ECO:0000313|EMBL:KIZ48164.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
multi anti extrusion protein MatE
SCNpilot_cont_1000_bf_scaffold_1821_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20509..21228)
DNA (720bp) protein (240aa)
Multi antimicrobial extrusion protein MatE n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J203_RHOP2
Cation transporter {ECO:0000313|EMBL:KIZ48164.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
multi anti extrusion protein MatE
SCNpilot_cont_1000_bf_scaffold_1821_21
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21290..22342)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036FC4C6 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL06430.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_1000_bf_scaffold_1821_22
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22365..23159)
DNA (795bp) protein (265aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LN57_9RHIZ
hpcG; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_cont_1000_bf_scaffold_1821_23
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(23226..24773)
DNA (1548bp) protein (516aa)
putative fatty-acid--CoA ligase (EC:6.2.1.-) rbh
Putative fatty-acid--CoA ligase {ECO:0000313|EMBL:BAN00992.1}; EC=6.2.1.- {ECO:0000313|EMBL:BAN00992.1};; TaxID=1313172 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
Putative fatty-acid--CoA ligase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZWX0_9ACTN rbh
SCNpilot_cont_1000_bf_scaffold_1821_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25312..26424)
DNA (1113bp) protein (371aa)
2-deoxycytidine 5-triphosphate deaminase {ECO:0000313|EMBL:KIZ48167.1}; EC=3.5.4.13 {ECO:0000313|EMBL:KIZ48167.1};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13]
dCTP deaminase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRM9_NITHX
Displaying 25 items

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