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SCNpilot_cont_1000_bf_scaffold_1915

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1915_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..254
DNA (252bp) protein (84aa)
UDPglucose 6-dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6V9_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46800.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
TRAP dicarboxylate transporter subunit DctP
SCNpilot_cont_1000_bf_scaffold_1915_2
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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393..962
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030A47D2 rbh
Dihydroxyacetone kinase {ECO:0000313|EMBL:ERF80177.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
TRAP dicarboxylate family transporter DctQ subunit
SCNpilot_cont_1000_bf_scaffold_1915_3
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

991..2139
DNA (1149bp) protein (383aa)
TRAP transporter, DctM subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H630_9BRAD
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KJC57604.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
TRAP dicarboxylate transporter subunit DctM
SCNpilot_cont_1000_bf_scaffold_1915_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2144..2605
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000369109B
UPF0311 protein QU41_20600 {ECO:0000256|HAMAP-Rule:MF_00775}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1915_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2973..3779
DNA (807bp) protein (269aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q139W8_RHOPS
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABE39121.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_1915_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3799..5679
DNA (1881bp) protein (627aa)
long-chain-fatty-acid-CoA-ligase; K12508 feruloyl-CoA synthase [EC:6.2.1.34]
feruloyl-CoA synthase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000362FE28
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46797.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_1000_bf_scaffold_1915_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5725..6486
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQF3_NITHX
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABE61544.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1915_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6648..7802
DNA (1155bp) protein (385aa)
Putative branched-chain amino acid transport system substrate-binding protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N8W4_RHOPA rbh
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIZ39725.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
branched-chain amino acid transport system substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_1915_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8029..8760)
DNA (732bp) protein (244aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q9P4_RHOPT
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACF00516.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_1000_bf_scaffold_1915_10
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8757..9740)
DNA (984bp) protein (328aa)
Branched-chain amino acid transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ICU4_9BRAD
Branched-chain amino acid transport system permease {ECO:0000313|EMBL:ERF80189.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
branched-chain amino acid transport system ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_1000_bf_scaffold_1915_11
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9737..10360)
DNA (624bp) protein (208aa)
metal-dependent hydrolase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000372EC0D
Putative ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter) branched-chain amino acid transport protein {ECO:0000313|EMBL:CCD93222.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
ABC transporter permease/ATP-binding protein
SCNpilot_cont_1000_bf_scaffold_1915_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10366..10779)
DNA (414bp) protein (138aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07K10_RHOP5
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ABJ07724.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_1915_13
unknown

Not on your lists

10820..11233
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1915_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11450..11965
DNA (516bp) protein (172aa)
MarR family transcriptional regulator n=1 Tax=Bradyrhizobium elkanii RepID=UPI000379F1F0
MarR family transcriptional regulator {ECO:0000313|EMBL:KIZ39730.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
MarR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_1915_15
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12094..13374)
DNA (1281bp) protein (427aa)
hydroxypyruvate reductase; K00050 hydroxypyruvate reductase [EC:1.1.1.81] rbh
Putative glycerate kinase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QMC9_9BRAD rbh
Hydroxypyruvate reductase {ECO:0000313|EMBL:KJC33575.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_1000_bf_scaffold_1915_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13623..14852)
DNA (1230bp) protein (410aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VJY0_RHOPX
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADU43242.1}; Flags: Precursor;; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_1000_bf_scaffold_1915_17
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15100..15618)
DNA (519bp) protein (173aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035C518F
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46785.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_1915_18
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15618..16172)
DNA (555bp) protein (185aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003776C63
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EJZ35222.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_1915_19
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16179..17201)
DNA (1023bp) protein (341aa)
ABC transporter permease n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003758B35
Bradyrhizobium elkanii strain UASWS1015 Contig181, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46784.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
high-affinity branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_1000_bf_scaffold_1915_20
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17204..18082)
DNA (879bp) protein (293aa)
Branched-chain amino acid transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HG23_9BRAD
Branched-chain amino acid transport system permease {ECO:0000313|EMBL:ERF83748.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_1000_bf_scaffold_1915_21
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18094..18807)
DNA (714bp) protein (238aa)
Branched-chain amino acid transport system ATP-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H1X1_9BRAD
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
Branched-chain amino acid transport system ATP-binding protein {ECO:0000313|EMBL:ERF83747.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_1000_bf_scaffold_1915_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18804..19538)
DNA (735bp) protein (245aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZA8_RHOP2
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ABD06452.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_1915_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19514..20350)
DNA (837bp) protein (279aa)
Transcriptional regulator, IclR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q216A7_RHOPB
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ABD87779.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1915_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20745..21644
DNA (900bp) protein (300aa)
pimF; enoyl-CoA hydratase (EC:4.2.1.17); K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
Enoyl-CoA hydratase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N3H7_RHOPA
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KIZ39417.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Displaying 24 items

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