ggKbase home page

SCNpilot_cont_1000_bf_scaffold_1961

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_1961_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..284
DNA (282bp) protein (94aa)
alkylated DNA repair protein; K03919 alkylated DNA repair protein [EC:1.14.11.-]
Alkylated DNA repair protein AlkB n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFV2_9BRAD
Alkylated DNA repair protein AlkB {ECO:0000313|EMBL:EKS39634.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_1000_bf_scaffold_1961_2
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

405..1574
DNA (1170bp) protein (390aa)
Extracellular ligand-binding receptor n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TMI4_TISMK
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:AFK53972.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_1000_bf_scaffold_1961_3
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1747..2445)
DNA (699bp) protein (233aa)
Putative 2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway), bifunctional protein isomerase/decarboxylase hpcE-like {ECO:0000313|EMBL:CCE06548.1}; EC=4.1.1.68 {ECO:0000313|EMBL:CCE06548.1};; EC=5.3.3.10 {ECO:0000313|EMBL:CCE06548.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.1.1.68 5.3.3.10)
Putative 2-oxohepta-3-ene-1,7-dioic acid hydratase (Catechol pathway), bifunctional protein isomerase/decarboxylase hpcE-like n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TJB0_9BRAD
SCNpilot_cont_1000_bf_scaffold_1961_4
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2449..3432)
DNA (984bp) protein (328aa)
metapyrocatechase (EC:1.13.11.2); K00446 catechol 2,3-dioxygenase [EC:1.13.11.2] rbh
Bll2967 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89R05_BRADU rbh
Bll2967 protein {ECO:0000313|EMBL:BAC48232.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_1000_bf_scaffold_1961_5
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3510..3905)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D334_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY52105.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_cont_1000_bf_scaffold_1961_6
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4188..4760
DNA (573bp) protein (191aa)
Homoprotocatechuate degradation operon regulator, HpaR n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IC67_9BRAD
Homoprotocatechuate degradation operon regulator, HpaR {ECO:0000313|EMBL:ERF81175.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
putative homoprotocatechuate degradative operon repressor, transcriptional regulatory protein MarR family, HpcR-like protein
SCNpilot_cont_1000_bf_scaffold_1961_7
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4915..6000
DNA (1086bp) protein (362aa)
Putative enzyme n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZB49_9BRAD rbh
Malate dehydrogenase {ECO:0000313|EMBL:KJC49362.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
putative enzyme rbh
SCNpilot_cont_1000_bf_scaffold_1961_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6120..6896
DNA (777bp) protein (259aa)
4-hydroxy-2-oxovalerate aldolase (EC:4.1.3.39); K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N3D9_RHOPA
HpcH/HpaI aldolase {ECO:0000313|EMBL:ACF02772.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_1000_bf_scaffold_1961_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6997..8520
DNA (1524bp) protein (508aa)
D-galactarate dehydratase/Altronate hydrolase (EC:4.2.1.42); K01708 galactarate dehydratase [EC:4.2.1.42]
Putative D-galactarate dehydratase/Altronate hydrolase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YR92_BRASO
Galactarate dehydratase {ECO:0000313|EMBL:KIZ32578.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_1000_bf_scaffold_1961_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8694..10280
DNA (1587bp) protein (529aa)
Radical SAM n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJX9_NITHX
radical SAM family protein
Radical SAM {ECO:0000313|EMBL:ABE63468.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1961_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10978..12801
DNA (1824bp) protein (608aa)
Putative RND superfamily transporter n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218B3_RHOPB
RND superfamily transporter; K07003
Putative RND superfamily transporter {ECO:0000313|EMBL:ABD87273.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1961_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12866..13363)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218B2_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87274.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_1961_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13948..14193
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218B1_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:KIZ44996.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_1961_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14449..15324
DNA (876bp) protein (292aa)
Squalene/phytoene synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJY3_NITHX
squalene/phytoene synthase
Squalene/phytoene synthase {ECO:0000313|EMBL:ABE63464.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_1961_15
unknown

Not on your lists

comp(15243..15968)
DNA (726bp) protein (242aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_1961_16
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16045..18948
DNA (2904bp) protein (968aa)
squalene cyclase (EC:5.4.99.17); K06045 squalene-hopene cyclase [EC:5.4.99.17 4.2.1.129]
Squalene-hopene cyclase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IC85_9BRAD
Squalene--hopene cyclase {ECO:0000313|EMBL:ETR76654.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_1000_bf_scaffold_1961_17
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18945..19706
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X036_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAQ34405.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_1000_bf_scaffold_1961_18
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19860..20588)
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Bradyrhizobium RepID=G7DBJ4_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL05364.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_1000_bf_scaffold_1961_19
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20789..21802)
DNA (1014bp) protein (338aa)
Fe-S oxidoreductase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQC0_NITWN
Fe-S oxidoreductase
Fe-S oxidoreductase {ECO:0000313|EMBL:ABA05521.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Displaying 19 items

View Taxonomy