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SCNpilot_cont_1000_bf_scaffold_2050

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_2050_1
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..178)
DNA (177bp) protein (59aa)
5-oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:ABR62476.1}; EC=3.5.2.9 {ECO:0000313|EMBL:ABR62476.1};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UFP6_SINMW
SCNpilot_cont_1000_bf_scaffold_2050_2
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(181..2253)
DNA (2073bp) protein (691aa)
5-oxoprolinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ52_9RHIZ
5-oxoprolinase {ECO:0000313|EMBL:EHK59244.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
N-methylhydantoinase A/acetone carboxylase, beta subunit
SCNpilot_cont_1000_bf_scaffold_2050_3
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2435..3262
DNA (828bp) protein (276aa)
oxidoreductase FAD/NAD(P)-binding protein; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
Oxidoreductase FAD/NAD(P)-binding protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11CP0_MESSB
Oxidoreductase FAD/NAD(P)-binding protein {ECO:0000313|EMBL:ABG64835.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_1000_bf_scaffold_2050_4
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3327..4016
DNA (690bp) protein (230aa)
Glycerol metabolism activator n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FDK7_9RHIZ
Glycerol metabolism activator {ECO:0000313|EMBL:CDX12409.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
two-component response regulator
SCNpilot_cont_1000_bf_scaffold_2050_5
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4020..4691)
DNA (672bp) protein (224aa)
DSBA oxidoreductase n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CW41_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGF70334.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
nahD; DSBA oxidoreductase
SCNpilot_cont_1000_bf_scaffold_2050_6
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4728..6284)
DNA (1557bp) protein (519aa)
gamma-aminobutyrate metabolism dehydratase/isomerase (EC:4.2.1.- 5.3.3.3); K00483 4-hydroxyphenylacetate-3-monooxygenase large chain [EC:1.14.14.9] rbh
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ98_AFIFE rbh
4-hydroxyphenylacetate 3-hydroxylase {ECO:0000313|EMBL:KFG70576.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_cont_1000_bf_scaffold_2050_7

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6375..7031
DNA (657bp) protein (219aa)
Transcriptional regulator, TetR family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TGN1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KKN87098.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_2050_8
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7028..7564
DNA (537bp) protein (179aa)
Isochorismatase hydrolase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M088_METRJ
Isochorismatase {ECO:0000313|EMBL:KGJ08953.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
isochorismatase hydrolase
SCNpilot_cont_1000_bf_scaffold_2050_9
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7666..9531
DNA (1866bp) protein (622aa)
UPI0003CED417 related cluster n=1 Tax=unknown RepID=UPI0003CED417
Short-chain dehydrogenase {ECO:0000313|EMBL:ESY73200.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
class II aldolase/adducin family protein
SCNpilot_cont_1000_bf_scaffold_2050_10
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9552..10823
DNA (1272bp) protein (424aa)
Methylthioribose kinase {ECO:0000256|HAMAP-Rule:MF_01683}; Short=MTR kinase {ECO:0000256|HAMAP-Rule:MF_01683};; EC=2.7.1.100 {ECO:0000256|HAMAP-Rule:MF_01683};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
5-methylthioribose kinase (EC:2.7.1.100); K00899 5-methylthioribose kinase [EC:2.7.1.100]
Methylthioribose kinase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F7L3_9RHIZ
SCNpilot_cont_1000_bf_scaffold_2050_11
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10904..12019
DNA (1116bp) protein (372aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
mtnA; methylthioribose-1-phosphate isomerase; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
UPI0003CE3FB7 related cluster n=1 Tax=unknown RepID=UPI0003CE3FB7
SCNpilot_cont_1000_bf_scaffold_2050_12
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12029..12610)
DNA (582bp) protein (194aa)
Conserved hypothetical membrane protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YES7_MOBAS
Conserved hypothetical membrane protein {ECO:0000313|EMBL:EAS48818.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2050_13
unknown

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12780..12983
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_2050_14
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12980..13576)
DNA (597bp) protein (199aa)
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] rbh
Isochorismatase hydrolase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11DE6_MESSB rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:ABG64579.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_1000_bf_scaffold_2050_15
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13710..14570
DNA (861bp) protein (287aa)
Xanthine dehydrogenase n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GZF6_9RHIZ
Xanthine dehydrogenase {ECO:0000313|EMBL:ESW78584.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein
SCNpilot_cont_1000_bf_scaffold_2050_16
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14567..14743
DNA (177bp) protein (59aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1N4_9RHIZ
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding {ECO:0000313|EMBL:CCV10098.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
Displaying 16 items

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