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SCNpilot_cont_1000_bf_scaffold_2089

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_2089_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..849)
DNA (849bp) protein (283aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
UDP-sugar epimerase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUC9_9BRAD
UDP-sugar epimerase {ECO:0000313|EMBL:EAQ36414.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_1000_bf_scaffold_2089_2
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1006..2082
DNA (1077bp) protein (359aa)
Putative Zn-dependent hydrolase of beta-lactamase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CQP3_9BRAD rbh
Membrane protein {ECO:0000313|EMBL:KJC61363.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
twin-arginine translocation pathway signal rbh
SCNpilot_cont_1000_bf_scaffold_2089_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2166..2882)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHJ1_NITHX
hypothetical protein; K09807 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64306.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2089_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2888..3127)
DNA (240bp) protein (80aa)
Transcription activator, effector binding n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CU5_RHOPB
transcription activator, effector binding
Transcription activator, effector binding {ECO:0000313|EMBL:ABD85791.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2089_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3875..4336
DNA (462bp) protein (154aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Diaminopimelate epimerase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P949_9BRAD
diaminopimelate epimerase
SCNpilot_cont_1000_bf_scaffold_2089_6
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4338..5609
DNA (1272bp) protein (424aa)
2-methylthioadenine synthase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003051E4A
2-methylthioadenine synthase {ECO:0000313|EMBL:KJC61359.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
MiaB-like tRNA modifying protein
SCNpilot_cont_1000_bf_scaffold_2089_7
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5751..6449)
DNA (699bp) protein (233aa)
hypothetical protein; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] rbh
pseudouridine synthase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000366D30B rbh
23S RNA-specific pseudouridylate synthase {ECO:0000313|EMBL:EIG60414.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_cont_1000_bf_scaffold_2089_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6601..7548
DNA (948bp) protein (316aa)
Signal recognition particle receptor FtsY n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SVV8_NITWN
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
cell division transporter substrate-binding protein FtsY; K03110 fused signal recognition particle receptor
SCNpilot_cont_1000_bf_scaffold_2089_9
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7550..8146
DNA (597bp) protein (199aa)
Probable intracellular septation protein A n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=YCIB_BRASO
intracellular septation protein A; K06190 intracellular septation protein
Probable intracellular septation protein A {ECO:0000255|HAMAP-Rule:MF_00189}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_cont_1000_bf_scaffold_2089_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8221..8580)
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CV1_RHOPB
DNA-binding protein {ECO:0000313|EMBL:KIZ40571.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2089_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8693..9292)
DNA (600bp) protein (200aa)
Periplasmic protein thiol n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13DT1_RHOPS rbh
periplasmic protein thiol; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE rbh
Periplasmic protein thiol {ECO:0000313|EMBL:ABE37758.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_2089_12
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9289..9468)
DNA (180bp) protein (60aa)
hemagglutination activity protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000310437C
Hemagglutination activity protein {ECO:0000313|EMBL:KJC43019.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
cycX; heme exporter protein D
SCNpilot_cont_1000_bf_scaffold_2089_13
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9474..10205)
DNA (732bp) protein (244aa)
Heme exporter protein C n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HC54_9BRAD rbh
Heme transporter HemC {ECO:0000313|EMBL:KJC55344.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ccmC; heme exporter protein C; K02195 heme exporter protein C
SCNpilot_cont_1000_bf_scaffold_2089_14
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10311..10979)
DNA (669bp) protein (223aa)
Heme exporter protein B n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRX7_9BRAD
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
heme exporter protein CcmB; K02194 heme exporter protein B
SCNpilot_cont_1000_bf_scaffold_2089_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10976..11578)
DNA (603bp) protein (201aa)
cytochrome c biogenesis protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41] rbh
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000255|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000255|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000255|HAMAP-Rule:MF_01707}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Cytochrome c biogenesis ATP-binding export protein CcmA n=2 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=CCMA_RHOPB rbh
SCNpilot_cont_1000_bf_scaffold_2089_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11782..12201
DNA (420bp) protein (140aa)
aconitate hydratase; K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Aconitase n=2 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J3F8_RHOP2
SCNpilot_cont_1000_bf_scaffold_2089_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12198..13826
DNA (1629bp) protein (543aa)
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase {ECO:0000256|RuleBase:RU361275, ECO:0000313|EMBL:CAE25646.1}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275, ECO:0000313|EMBL:CAE25646.1};; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
Aconitate hydratase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NDA7_RHOPA
Displaying 17 items

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