ggKbase home page

SCNpilot_cont_1000_bf_scaffold_2236

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_2236_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..415)
DNA (414bp) protein (138aa)
RNA polymerase sigma factor RpoH n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BQ7_RHOPB
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2236_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(633..1421)
DNA (789bp) protein (263aa)
pseudouridine synthase RluD; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Pseudouridine synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJH0_NITHX
SCNpilot_cont_1000_bf_scaffold_2236_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1477..1809
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07TG2_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ04772.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_2236_trna_1
unknown

Not on your lists

1931..2002
DNA (72bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_2236_4
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2228..2656)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EBL3_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ33557.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_1000_bf_scaffold_2236_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2796..3800)
DNA (1005bp) protein (335aa)
alkane 1-monooxygenase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003614248 rbh
Alkane 1-monooxygenase {ECO:0000313|EMBL:AHE52723.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
monooxygenase with ATPase activity, luciferase rbh
SCNpilot_cont_1000_bf_scaffold_2236_6
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4126..4854)
DNA (729bp) protein (243aa)
3-oxoacyl-ACP reductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003792496
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KJC58132.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
oxidoreductase
SCNpilot_cont_1000_bf_scaffold_2236_7
unknown

Not on your lists

comp(5247..5351)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_2236_8
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6167..6583
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WTQ3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36702.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
ycii-like protein
SCNpilot_cont_1000_bf_scaffold_2236_9
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6747..7166
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ERI1_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ38775.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_1000_bf_scaffold_2236_10
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7334..8116
DNA (783bp) protein (261aa)
TetR family transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003727647
Transcriptional regulator {ECO:0000313|EMBL:EJN12516.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_2236_11
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8244..8720
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WIR0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC38574.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2236_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9057..9770
DNA (714bp) protein (238aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20X60_RHOPB
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:ABD90276.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2236_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9795..10247
DNA (453bp) protein (151aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20X61_RHOPB
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ABD90275.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2236_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10254..11198
DNA (945bp) protein (315aa)
Putative TolA n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20X62_RHOPB rbh
putative TolA rbh
Putative TolA {ECO:0000313|EMBL:ABD90274.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2236_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11230..12582
DNA (1353bp) protein (451aa)
Protein TolB n=2 Tax=Rhodopseudomonas palustris RepID=TOLB_RHOPB
tolB; translocation protein TolB; K03641 TolB protein
Protein TolB {ECO:0000255|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2236_16
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12767..13660
DNA (894bp) protein (298aa)
Diguanylate cyclase/phosphodiesterase n=2 Tax=Rhodopseudomonas palustris RepID=B3QIC8_RHOPT
Diguanylate cyclase {ECO:0000313|EMBL:KJC43751.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
diguanylate cyclase/phosphodiesterase
Displaying 17 items

View Taxonomy