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SCNpilot_cont_1000_bf_scaffold_2296

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_2296_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..363)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIF7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63990.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2296_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(564..2465)
DNA (1902bp) protein (634aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIF8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63989.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2296_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2635..5454)
DNA (2820bp) protein (940aa)
LytTR family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI000382C15C
LytTR family transcriptional regulator {ECO:0000313|EMBL:KIZ33858.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
double-transmembrane region-like protein rbh
SCNpilot_cont_1000_bf_scaffold_2296_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5451..6395)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIG0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63987.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2296_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6395..7399)
DNA (1005bp) protein (335aa)
ATPase AAA; K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase associated with various cellular activities AAA_3 n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QIJ2_RHOPT rbh
ATPase associated with various cellular activities AAA_3 {ECO:0000313|EMBL:ACE99915.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_1000_bf_scaffold_2296_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7621..8244
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A2A47 rbh
hypothetical protein; K09986 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD05903.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_2296_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8241..8918
DNA (678bp) protein (226aa)
NUDIX hydrolase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034725AC rbh
NUDIX hydrolase rbh
NUDIX hydrolase {ECO:0000313|EMBL:ABE38535.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_2296_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8915..9178
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21AU7_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD86489.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2296_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9175..10227
DNA (1053bp) protein (351aa)
polynucleotide adenylyltransferase; K00970 poly(A) polymerase [EC:2.7.7.19]
Polynucleotide adenylyltransferase region n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIG5_NITHX
Polynucleotide adenylyltransferase region {ECO:0000313|EMBL:ABE63982.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2296_10
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10248..10829)
DNA (582bp) protein (194aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
coproporphyrinogen III oxidase (EC:1.3.3.3); K00228 coproporphyrinogen III oxidase [EC:1.3.3.3]
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU14_9BRAD
SCNpilot_cont_1000_bf_scaffold_2296_11
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10966..11331)
DNA (366bp) protein (122aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
6-pyruvoyl tetrahydrobiopterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IU10_9BRAD
SCNpilot_cont_1000_bf_scaffold_2296_12
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11460..12089)
DNA (630bp) protein (210aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPB9_NITWN
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2296_13
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12086..12556)
DNA (471bp) protein (157aa)
tRNA/rRNA methyltransferase SpoU; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPC0_NITWN
SCNpilot_cont_1000_bf_scaffold_2296_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12723..13178
DNA (456bp) protein (152aa)
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
petA; ubiquinol-cytochrome c reductase iron-sulfur subunit PetA (EC:1.10.2.2); K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2]
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEX5_9BRAD
SCNpilot_cont_1000_bf_scaffold_2296_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13234..15303
DNA (2070bp) protein (690aa)
Cytochrome b n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HNH6_9BRAD rbh
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
cytochrome b/c1 rbh
SCNpilot_cont_1000_bf_scaffold_2296_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15708..16733
DNA (1026bp) protein (342aa)
carboxymethylenebutenolidase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Carboxymethylenebutenolidase {ECO:0000313|EMBL:ABD05912.1}; EC=3.1.1.45 {ECO:0000313|EMBL:ABD05912.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
carboxymethylenebutenolidase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034BD4DF
SCNpilot_cont_1000_bf_scaffold_2296_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17201..18811
DNA (1611bp) protein (537aa)
anthranilate synthase; K13503 anthranilate synthase [EC:4.1.3.27]
Anthranilate synthase, component I {ECO:0000313|EMBL:ABE63973.1}; EC=4.1.3.27 {ECO:0000313|EMBL:ABE63973.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Anthranilate synthase, component I n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIH4_NITHX
Displaying 17 items

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