ggKbase home page

SCNpilot_cont_1000_bf_scaffold_2416

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_2416_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..297
DNA (297bp) protein (99aa)
60 kDa chaperonin n=1 Tax=Afipia sp. 1NLS2 RepID=D6V7D4_9BRAD
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
groEL; 60 kDa chaperonin protein; K04077 chaperonin GroEL
SCNpilot_cont_1000_bf_scaffold_2416_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

481..1680
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIL5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63932.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2416_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1801..3258
DNA (1458bp) protein (486aa)
FAD dependent oxidoreductase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QIE5_RHOPT
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KIZ41005.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
FAD dependent oxidoreductase
SCNpilot_cont_1000_bf_scaffold_2416_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3325..3735)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIL4_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63933.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2416_5
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4072..5817
DNA (1746bp) protein (582aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P3L1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35304.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative ABC transporter fused ATP-binding and permease components; K02471 putative ATP-binding cassette transporter
SCNpilot_cont_1000_bf_scaffold_2416_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5893..6834)
DNA (942bp) protein (314aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130Y7_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE99864.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_1000_bf_scaffold_2416_7
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7186..7566)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GRX9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF80362.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2416_8
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7751..8791)
DNA (1041bp) protein (347aa)
Glycolate oxidase iron-sulfur subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6I8_9BRAD
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
4Fe-4S ferredoxin; K11473 glycolate oxidase iron-sulfur subunit
SCNpilot_cont_1000_bf_scaffold_2416_9
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8788..10026)
DNA (1239bp) protein (413aa)
FAD/FMN-dependent dehydrogenase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QHN8_9BRAD
FAD/FMN-dependent dehydrogenase {ECO:0000313|EMBL:EIG59294.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
glcE; glycolate oxidase subunit; K11472 glycolate oxidase FAD binding subunit
SCNpilot_cont_1000_bf_scaffold_2416_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10098..10979)
DNA (882bp) protein (294aa)
glcD; glycolate oxidase subunit; K00104 glycolate oxidase [EC:1.1.3.15]
FAD/FMN-dependent dehydrogenase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QHN9_9BRAD
Putative glycolate oxidase subunit {ECO:0000313|EMBL:KGJ63927.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_cont_1000_bf_scaffold_2416_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10979..11446)
DNA (468bp) protein (156aa)
FAD linked oxidase domain-containing protein; K00104 glycolate oxidase [EC:1.1.3.15]
FAD linked oxidase domain protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HH1_RHOP5
FAD linked oxidase domain protein {ECO:0000313|EMBL:ABJ08613.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_2416_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11634..12020
DNA (387bp) protein (129aa)
cystathionine beta-lyase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003661861
cytochrome c, class I; K08738 cytochrome c
Cytochrome c, class I {ECO:0000313|EMBL:ABE63940.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2416_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12635..12946)
DNA (312bp) protein (104aa)
Branched-chain amino acid transport n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZ27_RHOP2
branched chain amino acid ABC transporter
Branched-chain amino acid transport {ECO:0000313|EMBL:ABD06533.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_2416_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12939..13688)
DNA (750bp) protein (250aa)
AzlC family protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HG8_RHOP5
AzlC-like protein
AzlC family protein {ECO:0000313|EMBL:ABJ08616.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_2416_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13854..15800)
DNA (1947bp) protein (649aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ftsH; metalloprotease FtsH (EC:3.4.24.-); K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Bradyrhizobiaceae RepID=F7QFH3_9BRAD
SCNpilot_cont_1000_bf_scaffold_2416_16
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15947..17023)
DNA (1077bp) protein (359aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
tRNA(Ile)-lysidine synthetase-like protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P6R4_9BRAD
SCNpilot_cont_1000_bf_scaffold_2416_17
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17133..18149)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G0W3_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL74400.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_1000_bf_scaffold_2416_18
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18401..18898)
DNA (498bp) protein (166aa)
Peptidoglycan-associated lipoprotein n=2 Tax=Rhodopseudomonas palustris RepID=B3QID0_RHOPT
Membrane protein {ECO:0000313|EMBL:KJC43749.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
OmpA/MotB
SCNpilot_cont_1000_bf_scaffold_2416_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18970..19695)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHQ8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64239.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2416_20
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19863..22145)
DNA (2283bp) protein (761aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HC58_9BRAD rbh
Diguanylate cyclase {ECO:0000313|EMBL:KJC43751.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_cont_1000_bf_scaffold_2416_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22375..23727)
DNA (1353bp) protein (451aa)
Protein TolB n=2 Tax=Rhodopseudomonas palustris RepID=TOLB_RHOPB
tolB; translocation protein TolB; K03641 TolB protein
Protein TolB {ECO:0000255|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2416_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23760..24704)
DNA (945bp) protein (315aa)
Putative TolA n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HF7_RHOP5
putative TolA protein; K03646 colicin import membrane protein
Putative TolA {ECO:0000313|EMBL:ABJ08627.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_2416_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24706..25155)
DNA (450bp) protein (150aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20X61_RHOPB
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ABD90275.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2416_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25186..25899)
DNA (714bp) protein (238aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20X60_RHOPB
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:ABD90276.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Displaying 24 items

View Taxonomy