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SCNpilot_cont_1000_bf_scaffold_2531

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_2531_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..611
DNA (609bp) protein (203aa)
Polyhydroxyalkanoate synthesis repressor PhaR n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WQZ5_9BRAD
Polyhydroxyalkanoate synthesis repressor PhaR {ECO:0000313|EMBL:EAQ37596.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
polyhydroxyalkanoate synthesis repressor PhaR
SCNpilot_cont_1000_bf_scaffold_2531_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(832..2676)
DNA (1845bp) protein (615aa)
diguanylate cyclase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002D8E208
Bradyrhizobium elkanii strain UASWS1015 Contig172, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49821.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
diguanylate cyclase/phosphodiesterase
SCNpilot_cont_1000_bf_scaffold_2531_3
unknown

Not on your lists

2892..3212
DNA (321bp) protein (107aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_2531_4
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3240..3848)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TIL8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE06306.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2531_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3876..4061)
DNA (186bp) protein (62aa)
50S ribosomal protein L32 n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IJZ7_9BRAD
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
SCNpilot_cont_1000_bf_scaffold_2531_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4220..4900)
DNA (681bp) protein (227aa)
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-]
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000255|HAMAP-Rule:MF_00766}; Short=Monofunctional TGase {ECO:0000255|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000255|HAMAP-Rule:MF_00766};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=MTGA_RHOP2
SCNpilot_cont_1000_bf_scaffold_2531_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5068..5994
DNA (927bp) protein (309aa)
polyprenyl synthetase; K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Farnesyl-diphosphate synthase {ECO:0000313|EMBL:ABE61511.1}; EC=2.5.1.10 {ECO:0000313|EMBL:ABE61511.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Farnesyl-diphosphate synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQI6_NITHX
SCNpilot_cont_1000_bf_scaffold_2531_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6003..6692
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21C15_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD86071.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2531_9
unknown

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comp(6720..6872)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_2531_10
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7042..7416
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RZ22_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD87199.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2531_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7539..9146
DNA (1608bp) protein (536aa)
Na+/H+ antiporter n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P970_9BRAD
Na+/H+ antiporter {ECO:0000313|EMBL:EKS37339.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family
SCNpilot_cont_1000_bf_scaffold_2531_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9301..10587)
DNA (1287bp) protein (429aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000255|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000255|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00159}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=ISPG_NITHX
SCNpilot_cont_1000_bf_scaffold_2531_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10601..11065)
DNA (465bp) protein (155aa)
Permeases of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NCF4_RHOPA
DMT family permease
Permeases of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CAE25962.1}; Flags: Precursor;; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_1000_bf_scaffold_2531_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11065..11388)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P784_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37341.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2531_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11479..11970)
DNA (492bp) protein (164aa)
Fur family transcriptional regulator, zinc uptake regulator n=2 Tax=Bradyrhizobium RepID=U1HEK8_9BRAD
Fur family transcriptional regulator, zinc uptake regulator {ECO:0000313|EMBL:ERF82906.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ferric uptake regulator family protein; K09823 Fur family transcriptional regulator, zinc uptake regulator
SCNpilot_cont_1000_bf_scaffold_2531_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12192..13343
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PG54_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37343.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
esterase; K07001 NTE family protein
SCNpilot_cont_1000_bf_scaffold_2531_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13597..14091
DNA (495bp) protein (165aa)
Transcriptional regulator, MarR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQJ1_NITHX
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABE61506.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2531_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14084..15256
DNA (1173bp) protein (391aa)
Secretion protein HlyD n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQJ2_NITHX
secretion protein HlyD; K03543 multidrug resistance protein A
Secretion protein HlyD {ECO:0000313|EMBL:ABE61505.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2531_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15353..16615
DNA (1263bp) protein (421aa)
Drug resistance transporter EmrB/QacA subfamily n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQJ3_NITHX
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
Drug resistance transporter EmrB/QacA subfamily {ECO:0000313|EMBL:ABE61504.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2531_20
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16714..17304)
DNA (591bp) protein (197aa)
protocatechuate 3,4-dioxygenase alpha chain; K00448 protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
protocatechuate 3,4-dioxygenase subunit alpha n=1 Tax=Bradyrhizobium elkanii RepID=UPI000361CF46
Protocatechuate 3,4-dioxygenase {ECO:0000313|EMBL:KJC51630.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_1000_bf_scaffold_2531_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17301..18002)
DNA (702bp) protein (234aa)
pcaH; protocatechuate 3,4-dioxygenase subunit beta; K00449 protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase, beta subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PA67_9BRAD
Protocatechuate 3,4-dioxygenase, beta subunit {ECO:0000313|EMBL:EKS36505.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_1000_bf_scaffold_2531_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18072..18359)
DNA (288bp) protein (96aa)
pcaF; beta-ketoadipyl CoA thiolase (EC:2.3.1.9); K07823 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
Putative acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CAE25957.1}; EC=2.3.1.9 {ECO:0000313|EMBL:CAE25957.1};; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
acetyl-CoA acetyltransferase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000348C7DC
Displaying 22 items

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