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SCNpilot_cont_1000_bf_scaffold_2760

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_2760_1
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..161)
DNA (159bp) protein (53aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F8145B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL78578.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_1000_bf_scaffold_2760_2
Agrobacterium fabrum, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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486..695
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00035E78DF
hypothetical protein
UPF0337 protein Atu4724; TaxID=176299 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium; tumefaciens (strain C58)).;"
SCNpilot_cont_1000_bf_scaffold_2760_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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710..1207
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034C21AA
Uncharacterized protein {ECO:0000313|EMBL:KIZ47462.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2760_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1361..1621)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217X5_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87311.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_2760_5
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1774..1935)
DNA (162bp) protein (54aa)
Uncharacterized protein n=3 Tax=Rhizobium meliloti RepID=F6E7G2_SINMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH83180.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_cont_1000_bf_scaffold_2760_6
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2207..2659)
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SNJ4_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA06147.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_1000_bf_scaffold_2760_7
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3082..4026
DNA (945bp) protein (315aa)
thyX; FAD-dependent thymidylate synthase; K03465 thymidylate synthase (FAD) [EC:2.1.1.148]
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Thymidylate synthase ThyX n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IAX7_AZOC5
SCNpilot_cont_1000_bf_scaffold_2760_8

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4183..4464
DNA (282bp) protein (94aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
thyA; thymidylate synthase; K00560 thymidylate synthase [EC:2.1.1.45]
Thymidylate synthase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU79_9BRAD
SCNpilot_cont_1000_bf_scaffold_2760_9

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4461..4997
DNA (537bp) protein (179aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJT9_NITHX
SCNpilot_cont_1000_bf_scaffold_2760_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5205..6362
DNA (1158bp) protein (386aa)
HflK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-]
membrane protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003477506 rbh
Protease FtsH subunit HflK {ECO:0000313|EMBL:ABE63507.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_2760_11
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6359..7177
DNA (819bp) protein (273aa)
hypothetical protein; K04087 membrane protease subunit HflC [EC:3.4.-.-]
Protein HflC n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQ39_NITWN
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_1000_bf_scaffold_2760_12
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7324..7524
DNA (201bp) protein (67aa)
Bsl6507 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89G40_BRADU
Membrane protein {ECO:0000313|EMBL:KJC52943.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein; K09937 hypothetical protein
SCNpilot_cont_1000_bf_scaffold_2760_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7679..9256
DNA (1578bp) protein (526aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-]
Peptidase S1C, Do n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q134B6_RHOPS
Peptidase S1C, Do {ECO:0000313|EMBL:ABE40573.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_2760_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9266..9613)
DNA (348bp) protein (116aa)
arsC2; arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
Arsenate reductase {ECO:0000256|RuleBase:RU362029, ECO:0000313|EMBL:CAE28995.1}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
arsenate reductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003B5DF44
SCNpilot_cont_1000_bf_scaffold_2760_15
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9726..10619)
DNA (894bp) protein (298aa)
phosphoserine phosphatase SerB (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3] rbh
Phosphoserine phosphatase SerB n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU75_9BRAD rbh
Phosphoserine phosphatase SerB {ECO:0000313|EMBL:EAQ36462.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_1000_bf_scaffold_2760_16
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10812..11384
DNA (573bp) protein (191aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; tRNA dimethylallyltransferase; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="
tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA delta(2)-isopentenylpyrophosphate transferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=UPI00006E20BA
SCNpilot_cont_1000_bf_scaffold_2760_17
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11864..13642
DNA (1779bp) protein (593aa)
acetolactate synthase 3 catalytic subunit (EC:1.2.2.2); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase, large subunit {ECO:0000313|EMBL:ABA05597.1}; EC=2.2.1.6 {ECO:0000313|EMBL:ABA05597.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Acetolactate synthase, large subunit n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQ44_NITWN
SCNpilot_cont_1000_bf_scaffold_2760_18
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13835..14377
DNA (543bp) protein (181aa)
Acetolactate synthase small subunit {ECO:0000313|EMBL:EAQ36465.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EAQ36465.1};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
ilvH; acetolactate synthase 3 regulatory subunit (EC:2.2.1.6); K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
Acetolactate synthase small subunit n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WU78_9BRAD
SCNpilot_cont_1000_bf_scaffold_2760_19
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14396..15277
DNA (882bp) protein (294aa)
Putative amino acid metabolite efflux pump n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G2R6_9BRAD
putative amino acid metabolite efflux pump; K15268 O-acetylserine/cysteine efflux transporter
Putative amino acid metabolite efflux pump {ECO:0000313|EMBL:BAL75053.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_1000_bf_scaffold_2760_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15274..15891
DNA (618bp) protein (206aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VCX8_RHOPX
lysine exporter protein LysE/YggA
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:ADU45047.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_1000_bf_scaffold_2760_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16053..16811
DNA (759bp) protein (253aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; Ketol-acid reductoisomerase; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ketol-acid reductoisomerase; K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
ketol-acid reductoisomerase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034C1449
Displaying 21 items

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