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SCNpilot_cont_1000_bf_scaffold_280

Search features with annotation key words

Displaying items 1-30 of 187 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_280_1
Avibacterium paragallinarum, Avibacterium, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

406..1122
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Streptomyces prunicolor RepID=UPI0003705891
transcriptional regulatory protein; K13637 GntR family transcriptional regulator, uxuAB operon transcriptional repressor
GntR family transcriptional regulator {ECO:0000313|EMBL:KKA98680.1}; TaxID=728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Avibacterium.;" source="Avibacterium paragallinarum (Haemophilus gallinarum).;"
SCNpilot_cont_1000_bf_scaffold_280_2
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1418..2596
DNA (1179bp) protein (393aa)
galactonate dehydratase (EC:4.2.1.6) rbh
Galactonate dehydratase {ECO:0000313|EMBL:AEG14196.1}; EC=4.2.1.6 {ECO:0000313|EMBL:AEG14196.1};; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
Galactonate dehydratase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CPA5_DESK7 rbh
SCNpilot_cont_1000_bf_scaffold_280_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2641..4083
DNA (1443bp) protein (481aa)
aldehyde-dehydrogenase-like protein y4uC (EC:1.2.1.-) rbh
Putative aldehyde-dehydrogenase-like protein y4uC n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIR4_9BACT rbh
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
SCNpilot_cont_1000_bf_scaffold_280_4
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4094..5236
DNA (1143bp) protein (381aa)
alcohol dehydrogenase; K13954 alcohol dehydrogenase [EC:1.1.1.1]
Alcohol dehydrogenase, class IV n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WCS9_DESOD
Alcohol dehydrogenase, class IV {ECO:0000313|EMBL:AET66835.1}; TaxID=768706 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 /; VKM B-1628) (Desulfotomaculum orientis).;"
SCNpilot_cont_1000_bf_scaffold_280_5
Bilophila sp. 4_1_30, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5264..6091
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Bilophila sp. 4_1_30 RepID=G1V7R7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EGW43544.1}; TaxID=693988 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila sp. 4_1_30.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_1000_bf_scaffold_280_6
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6088..7140
DNA (1053bp) protein (351aa)
Sorbitol dehydrogenase n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6E085_9BACI
Uncharacterized protein {ECO:0000313|EMBL:KJS21025.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
sorbitol dehydrogenase
SCNpilot_cont_1000_bf_scaffold_280_7
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7358..8428
DNA (1071bp) protein (357aa)
TRAP dicarboxylate transporter, DctP subunit n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CPA6_DESK7
TRAP dicarboxylate transporter subunit DctP
TRAP dicarboxylate transporter, DctP subunit {ECO:0000313|EMBL:AEG14197.1}; Flags: Precursor;; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
SCNpilot_cont_1000_bf_scaffold_280_8
Pelosinus sp. UFO1, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8421..10331
DNA (1911bp) protein (637aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5ECF6_AMICL
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:AIF53580.1}; TaxID=484770 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus sp. UFO1.;"
TRAP dicarboxylate transporter subunit DctM; K11690 C4-dicarboxylate transporter, DctM subunit
SCNpilot_cont_1000_bf_scaffold_280_9
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10400..11485
DNA (1086bp) protein (362aa)
Amidohydrolase 2 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUL4_PARL1
Amidohydrolase {ECO:0000313|EMBL:KJR64480.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
amidohydrolase 2
SCNpilot_cont_1000_bf_scaffold_280_10
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11983..12768)
DNA (786bp) protein (262aa)
Putative GntR-family transcriptional regulator n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FX03_PELBH
Putative GntR-family transcriptional regulator {ECO:0000313|EMBL:EAU48399.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_280_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12885..13730)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FX15_PELBH
putative TIM-barrel fold metal-dependent hydrolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_1000_bf_scaffold_280_12
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13759..14526)
DNA (768bp) protein (256aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Saccharomonospora marina XMU15 RepID=H5X1N4_9PSEU
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EHR50897.1}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_1000_bf_scaffold_280_13
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14541..15815)
DNA (1275bp) protein (425aa)
ABC transporter ATP-binding protein n=1 Tax=Amycolatopsis methanolica RepID=UPI0003798BB6
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIJ23910.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_1000_bf_scaffold_280_14
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15781..16806)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FX20_PELBH
Uncharacterized protein {ECO:0000313|EMBL:EAU48382.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
NMT1/THI5 like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_280_15
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16846..17694)
DNA (849bp) protein (283aa)
Acetoacetate decarboxylase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VE83_SPHWW
Carboxy-lyase {ECO:0000313|EMBL:AHH95455.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
acetoacetate decarboxylase
SCNpilot_cont_1000_bf_scaffold_280_16
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17835..19277)
DNA (1443bp) protein (481aa)
Acyl-CoA synthase n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FX11_PELBH rbh
Acyl-CoA synthase {ECO:0000313|EMBL:EAU48391.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
AMP-dependent synthetase and ligase
SCNpilot_cont_1000_bf_scaffold_280_17
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19283..20140)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FX15_PELBH
Uncharacterized protein {ECO:0000313|EMBL:EAU48387.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
amidohydrolase; K07045
SCNpilot_cont_1000_bf_scaffold_280_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20220..20441
DNA (222bp) protein (74aa)
transposase n=1 Tax=Rhizobium leguminosarum RepID=UPI0002D935D2
putative transposase; K07492 putative transposase
Putative transposase {ECO:0000313|EMBL:CAK10392.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_1000_bf_scaffold_280_19
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20622..21464
DNA (843bp) protein (281aa)
Uncharacterized protein {ECO:0000313|EMBL:KGF68614.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
putative long-chain-fatty-acid-CoA ligase
Putative fatty acid CoA ligase id=4892764 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. ORS 375 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
SCNpilot_cont_1000_bf_scaffold_280_20
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21698..24178)
DNA (2481bp) protein (827aa)
Uncharacterized protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LMZ6_DINSH rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABV92140.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
SCNpilot_cont_1000_bf_scaffold_280_21
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24465..25259)
DNA (795bp) protein (265aa)
Transcriptional regulator protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JI43_AGRRK rbh
transcriptional regulator protein; K03710 GntR family transcriptional regulator rbh
Transcriptional regulator {ECO:0000313|EMBL:EJK79970.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_1000_bf_scaffold_280_22
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25456..26688
DNA (1233bp) protein (411aa)
argE; acetylornithine deacetylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] rbh
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhizobium sp. AP16 RepID=J2CSD1_9RHIZ rbh
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EJK79969.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_1000_bf_scaffold_280_23
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26694..28244
DNA (1551bp) protein (517aa)
Peptide ABC transporter n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JI41_AGRRK rbh
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAJ93718.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
peptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_280_24
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28307..29254
DNA (948bp) protein (316aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium sp. AP16 RepID=J2DB65_9RHIZ rbh
ABC transporter {ECO:0000313|EMBL:KEA08096.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component rbh
SCNpilot_cont_1000_bf_scaffold_280_25
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29247..30071
DNA (825bp) protein (275aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium sp. CF142 RepID=J2LEZ2_9RHIZ rbh
Peptide ABC transporter permease {ECO:0000313|EMBL:KGE00141.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
dppCch1; dipeptide ABC transporter; K02034 peptide/nickel transport system permease protein rbh
SCNpilot_cont_1000_bf_scaffold_280_26
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30082..31743
DNA (1662bp) protein (554aa)
ATPase component of various ABC-type transport systems with duplicated ATPase domain n=1 Tax=Rhizobium sp. CF142 RepID=J2B6G1_9RHIZ rbh
ATPase component of various ABC-type transport systems with duplicated ATPase domain {ECO:0000313|EMBL:EJJ31650.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
peptide ABC transporter rbh
SCNpilot_cont_1000_bf_scaffold_280_27
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31749..32969
DNA (1221bp) protein (407aa)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; K01438 acetylornithine deacetylase [EC:3.5.1.16] rbh
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Rhizobium sp. AP16 RepID=J2CSC5_9RHIZ rbh
Acetylornithine deacetylase {ECO:0000313|EMBL:KEA08099.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_cont_1000_bf_scaffold_280_28
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32975..34099
DNA (1125bp) protein (375aa)
peptidase; K01271 Xaa-Pro dipeptidase [EC:3.4.13.9] rbh
Xaa-Pro aminopeptidase n=1 Tax=Rhizobium sp. CF142 RepID=J2LDP0_9RHIZ rbh
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:EJJ31652.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_1000_bf_scaffold_280_29
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34186..34347)
DNA (162bp) protein (54aa)
Transposase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98A49_RHILO
integrase catalytic subunit; K07497 putative transposase
Integrase catalytic region {ECO:0000313|EMBL:ABS68142.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_1000_bf_scaffold_280_30
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34772..39196
DNA (4425bp) protein (1475aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1TA94_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EJJ28671.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein rbh
Displaying items 1-30 of 187 in total

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