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SCNpilot_cont_1000_bf_scaffold_604

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_604_1
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..185
DNA (183bp) protein (61aa)
carbon-monoxide dehydrogenase large subunit, coxL-like protein (EC:1.2.99.2)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein {ECO:0000313|EMBL:ABQ32851.1}; EC=1.17.1.4 {ECO:0000313|EMBL:ABQ32851.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Putative carbon-monoxide dehydrogenase large subunit, coxL-like protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SCT6_9BRAD
SCNpilot_cont_1000_bf_scaffold_604_2
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

203..1003
DNA (801bp) protein (267aa)
carbon monoxide dehydrogenase (EC:1.2.99.2); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] rbh
Carbon-monoxide dehydrogenase medium subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IGH8_9BRAD
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:KJC39005.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_1000_bf_scaffold_604_3
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1228..2010)
DNA (783bp) protein (261aa)
Sulfur oxidation protein SoxZ n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CNH3_9RHIZ
Sulfur oxidation protein SoxZ {ECO:0000313|EMBL:EIZ85677.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
sulfur oxidation protein SoxZ
SCNpilot_cont_1000_bf_scaffold_604_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2033..2614)
DNA (582bp) protein (194aa)
Rhodanese n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EMG3_METSB
Bradyrhizobium elkanii strain UASWS1015 Contig179, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47763.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
rhodanese
SCNpilot_cont_1000_bf_scaffold_604_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2611..3576)
DNA (966bp) protein (322aa)
Transcriptional regulator, TetR family n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7XQM6_9RHIZ
Bradyrhizobium elkanii strain UASWS1015 Contig179, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47762.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
metallo-hydrolase/oxidoreductase
SCNpilot_cont_1000_bf_scaffold_604_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3655..4863)
DNA (1209bp) protein (403aa)
Coenzyme PQQ synthesis protein E n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLR2_9BRAD
Coenzyme PQQ synthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; Pyrroloquinoline quinone biosynthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
pyrroloquinoline quinone biosynthesis protein PqqE; K06139 pyrroloquinoline quinone biosynthesis protein E
SCNpilot_cont_1000_bf_scaffold_604_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4860..5144)
DNA (285bp) protein (95aa)
Coenzyme PQQ synthesis D n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21AY4_RHOPB
Pyrroloquinoline quinone biosynthesis protein PqqD {ECO:0000313|EMBL:KIZ47905.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
coenzyme PQQ synthesis D; K06138 pyrroloquinoline quinone biosynthesis protein D
SCNpilot_cont_1000_bf_scaffold_604_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5186..5950)
DNA (765bp) protein (255aa)
Pyrroloquinoline-quinone synthase {ECO:0000256|HAMAP-Rule:MF_00654}; EC=1.3.3.11 {ECO:0000256|HAMAP-Rule:MF_00654};; Coenzyme PQQ synthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; Pyrroloquinoline quinone biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
coenzyme PQQ biosynthesis protein C (EC:1.3.3.11); K06137 pyrroloquinoline-quinone synthase [EC:1.3.3.11] rbh
Pyrroloquinoline-quinone synthase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VDS8_RHOPX rbh
SCNpilot_cont_1000_bf_scaffold_604_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5947..6876)
DNA (930bp) protein (310aa)
pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Bradyrhizobium elkanii RepID=UPI000382D540
Coenzyme PQQ synthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653, ECO:0000256|SAAS:SAAS00055095}; Pyrroloquinoline quinone biosynthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
coenzyme PQQ synthesis protein B; K06136 pyrroloquinoline quinone biosynthesis protein B
SCNpilot_cont_1000_bf_scaffold_604_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7112..8173)
DNA (1062bp) protein (354aa)
Transcriptional regulator, LysR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R898_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP50026.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
LysR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_604_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8262..9410)
DNA (1149bp) protein (383aa)
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:CCD02980.1}; EC=1.3.99.- {ECO:0000313|EMBL:CCD02980.1};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Putative acyl-CoA dehydrogenase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AYM1_AZOBR rbh
putative acyl-CoA dehydrogenase rbh
SCNpilot_cont_1000_bf_scaffold_604_12
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9410..9796)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y5K5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMS42126.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
acyl-CoA dehydrogenase
SCNpilot_cont_1000_bf_scaffold_604_13
unknown

Not on your lists

9858..10538
DNA (681bp) protein (227aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_604_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10513..10989
DNA (477bp) protein (159aa)
AsnC family transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI0002DDE99F
AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ABD06211.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_604_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11047..14367)
DNA (3321bp) protein (1107aa)
carbamoyl-phosphate synthase large subunit n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036CF67E
Bradyrhizobium elkanii strain UASWS1015 Contig182, whole genome shotgun sequence {ECO:0000313|EMBL:KIU46299.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
carbamoyl-phosphate synthase L chain, ATP-binding
SCNpilot_cont_1000_bf_scaffold_604_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14432..16135)
DNA (1704bp) protein (568aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLH6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07829.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
AMP-dependent synthetase and ligase
SCNpilot_cont_1000_bf_scaffold_604_17
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16166..17911)
DNA (1746bp) protein (582aa)
AMP-dependent synthetase and ligase; K02182 crotonobetaine/carnitine-CoA ligase [EC:6.2.1.-]
AMP-dependent synthetase and ligase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNF0_VEREI
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABM59157.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_1000_bf_scaffold_604_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17924..18799)
DNA (876bp) protein (292aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J3L9_RHOP2 rbh
binding-protein dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABD04941.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_604_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18801..19754)
DNA (954bp) protein (318aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PWW5_9BRAD rbh
Putative glutathione transporter, permease component {ECO:0000313|EMBL:EGP07827.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
binding-protein dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein rbh
SCNpilot_cont_1000_bf_scaffold_604_20
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19829..21385)
DNA (1557bp) protein (519aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PJM9_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS42827.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_604_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21399..22499)
DNA (1101bp) protein (367aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q683_RHOPT rbh
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein rbh
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ACF00160.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_1000_bf_scaffold_604_22
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22454..23509)
DNA (1056bp) protein (352aa)
Oligopeptide/dipeptide ABC transporter n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PTF7_9BRAD rbh
Oligopeptide/dipeptide ABC transporter {ECO:0000313|EMBL:EKS42825.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
oligopeptide/dipeptide ABC transporter ATPase rbh
SCNpilot_cont_1000_bf_scaffold_604_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23891..24643
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLH0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07823.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
GntR family transcriptional regulator rbh
SCNpilot_cont_1000_bf_scaffold_604_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24640..25575)
DNA (936bp) protein (312aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J3M2_RHOP2 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD04938.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_604_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25893..27443)
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTP9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41723.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
long-chain-fatty-acid--CoA ligase
SCNpilot_cont_1000_bf_scaffold_604_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27446..28081)
DNA (636bp) protein (212aa)
fabG3; 3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PGG6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41722.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_1000_bf_scaffold_604_27
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28065..30494)
DNA (2430bp) protein (810aa)
Carbon-monoxide dehydrogenase, large subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJK7_9BRAD
Carbon-monoxide dehydrogenase, large subunit {ECO:0000313|EMBL:EKS41721.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative dehydrogenase
SCNpilot_cont_1000_bf_scaffold_604_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30487..31248)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NNK8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31932.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
putative beta-lactamase-like protein
SCNpilot_cont_1000_bf_scaffold_604_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31245..31745)
DNA (501bp) protein (167aa)
carbon monoxide dehydrogenase small chain (EC:1.2.99.2); K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLR8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41719.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_1000_bf_scaffold_604_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31738..32616)
DNA (879bp) protein (293aa)
carbon monoxide dehydrogenase medium chain (EC:1.2.99.2); K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTP1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41718.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Displaying items 1-30 of 110 in total

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