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SCNpilot_cont_1000_bf_scaffold_742

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_742_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1508
DNA (1506bp) protein (502aa)
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Threonine--tRNA ligase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07P57_RHOP5
SCNpilot_cont_1000_bf_scaffold_742_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1762..2325
DNA (564bp) protein (188aa)
Nitroreductase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07P59_RHOP5
nitroreductase
Nitroreductase {ECO:0000313|EMBL:ABJ06275.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_742_3
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2469..4934)
DNA (2466bp) protein (822aa)
diguanylate cyclase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000366CB55 rbh
Diguanylate cyclase {ECO:0000313|EMBL:KGT75745.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_742_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5106..6125)
DNA (1020bp) protein (340aa)
FHA domain containing protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IY48_RHOP2
Signal peptide protein {ECO:0000313|EMBL:KIZ42110.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
FHA domain-containing protein
SCNpilot_cont_1000_bf_scaffold_742_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6520..7581
DNA (1062bp) protein (354aa)
Patatin n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMS9_NITHX
patatin; K07001 NTE family protein
Patatin {ECO:0000313|EMBL:ABE62468.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_742_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7642..8070)
DNA (429bp) protein (143aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000313|EMBL:EGP06855.1}; EC=1.1.1.205 {ECO:0000313|EMBL:EGP06855.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
inosine-5-monophosphate dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002F0443C
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_742_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8371..9147)
DNA (777bp) protein (259aa)
Rhomboid-like protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212L5_RHOPB
rhomboid-like protein
Rhomboid-like protein {ECO:0000313|EMBL:ABD88671.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_742_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9846..10403
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMT3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62464.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_742_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10623..11237
DNA (615bp) protein (205aa)
Type IV pilus assembly PilZ n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212L1_RHOPB
type IV pilus assembly PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:ABD88675.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_742_10
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11579..12196
DNA (618bp) protein (206aa)
transglutaminase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037F91A3 rbh
Transglutaminase {ECO:0000313|EMBL:KJC53400.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_742_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12434..12964)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07P77_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ06257.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_742_12
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13047..13376)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EE0E62
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAQ35450.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_1000_bf_scaffold_742_13
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13657..14307
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RV69_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD85846.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
conserved exported hypothetical protein
SCNpilot_cont_1000_bf_scaffold_742_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14420..14638)
DNA (219bp) protein (73aa)
Uncharacterized protein n=6 Tax=Bradyrhizobium RepID=G7D2I0_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:KIZ45656.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_742_15
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14787..15614)
DNA (828bp) protein (276aa)
serine O-acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine O-acetyltransferase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ISZ7_9BRAD
Serine acetyltransferase {ECO:0000313|EMBL:KJC62340.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_1000_bf_scaffold_742_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16190..17470
DNA (1281bp) protein (427aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212J9_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88687.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_742_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17428..18180)
DNA (753bp) protein (251aa)
Alpha/beta hydrolase fold n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212J8_RHOPB rbh
alpha/beta hydrolase fold protein rbh
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABD88688.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_742_18
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18381..19502)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TD72_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE04410.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
conserved exported hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_742_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19826..19996
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212J6_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88690.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_742_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20010..21194
DNA (1185bp) protein (395aa)
salicylate 1-monooxygenase (EC:1.14.13.1); K00480 salicylate hydroxylase [EC:1.14.13.1]
Putative Salicylate 1-monooxygenase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EM32_BRASB
Monooxygenase {ECO:0000313|EMBL:KIZ45660.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_1000_bf_scaffold_742_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21270..21674)
DNA (405bp) protein (135aa)
Twin-arginine translocation pathway signal n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QK80_NITHX
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABE63367.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_742_22
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21981..23069
DNA (1089bp) protein (363aa)
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000377B205
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:BAL08283.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_1000_bf_scaffold_742_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23300..24649
DNA (1350bp) protein (450aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
nicotinate phosphoribosyltransferase (EC:2.4.2.11); K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
Nicotinate phosphoribosyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=PNCB_NITHX
SCNpilot_cont_1000_bf_scaffold_742_24
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25247..25900
DNA (654bp) protein (218aa)
TetR family transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003790D95
transcriptional regulator; K09017 TetR/AcrR family transcriptional regulator
Transcriptional regulatory protein {ECO:0000313|EMBL:BAR61566.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_1000_bf_scaffold_742_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26160..26921)
DNA (762bp) protein (254aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q654_RHOPT
ABC transporter permease {ECO:0000313|EMBL:KIZ41611.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
inner-membrane translocator
Displaying 25 items

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