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SCNpilot_cont_1000_bf_scaffold_789

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_789_1
unknown

Not on your lists

comp(1..60)
DNA (60bp) protein (20aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_789_2
unknown

Not on your lists

comp(376..717)
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_789_3
bacterium YEK0313, Bacteria

Not on your lists

comp(1316..2398)
DNA (1083bp) protein (361aa)
Putative oxidoreductase, LLM family n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I189_9BRAD rbh
Alkanal monooxygenase alpha chain {ECO:0000313|EMBL:CEJ13801.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
oxidoreductase rbh
SCNpilot_cont_1000_bf_scaffold_789_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2478..3290)
DNA (813bp) protein (271aa)
Putative TIM-barrel fold metal-dependent hydrolase id=2654086 bin=GWC2_Methylomirabilis_70_24 species=Pseudomonas sp. GM67 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
amidohydrolase 2
Tax=GWA2_Rokubacteria_70_23_curated
SCNpilot_cont_1000_bf_scaffold_789_5
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3725..4033
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1B566_RHOOB
Stress protein {ECO:0000313|EMBL:AII08018.1}; TaxID=37919 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia opaca).;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_789_6
Rhodococcus sp. PY11, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4043..4975
DNA (933bp) protein (311aa)
Putative cyclase family protein n=1 Tax=Rhodococcus sp. PY11 RepID=B5MAD9_9NOCA rbh
Putative cyclase family protein {ECO:0000313|EMBL:CAR47867.1}; TaxID=551544 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. PY11.;"
cyclase family protein rbh
SCNpilot_cont_1000_bf_scaffold_789_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5104..6225
DNA (1122bp) protein (374aa)
Beta WD-40 repeat-containing G-protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3I5_9BRAD
Beta WD-40 repeat-containing G-protein {ECO:0000313|EMBL:EFI52515.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
beta WD-40 repeat-containing G-protein
SCNpilot_cont_1000_bf_scaffold_789_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6381..7193
DNA (813bp) protein (271aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVG2_RHOP2 rbh
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
ABC transporter related {ECO:0000313|EMBL:ABD07798.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_789_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7204..7977
DNA (774bp) protein (258aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVG3_RHOP2 rbh
binding-protein dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABD07797.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_789_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7996..9087
DNA (1092bp) protein (364aa)
Putative exported protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVG4_RHOP2 rbh
hypothetical protein rbh
Putative exported protein {ECO:0000313|EMBL:ABD07796.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_789_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9122..10003
DNA (882bp) protein (294aa)
molybdopterin dehydrogenase, FAD-binding; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Molybdopterin dehydrogenase, FAD-binding n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVF8_RHOP2
Molybdopterin dehydrogenase, FAD-binding {ECO:0000313|EMBL:ABD07802.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_789_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10000..10482
DNA (483bp) protein (161aa)
(2Fe-2S)-binding protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2]
(2Fe-2S)-binding protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVF9_RHOP2
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_1000_bf_scaffold_789_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10479..12794
DNA (2316bp) protein (772aa)
carbon-monoxide dehydrogenase; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2] rbh
Carbon-monoxide dehydrogenase {ECO:0000313|EMBL:ABD07800.1}; EC=1.2.99.2 {ECO:0000313|EMBL:ABD07800.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Carbon-monoxide dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVG0_RHOP2 rbh
SCNpilot_cont_1000_bf_scaffold_789_14
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12804..13526
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F15704
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACD20543.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_cont_1000_bf_scaffold_789_15
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13586..14554
DNA (969bp) protein (323aa)
Aminocarboxymuconate-semialdehyde decarboxylase (Fragment) id=1937569 bin=GWD2_Deltaproteobacteria_55_8 species=Burkholderia sp. TJI49 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_53_10_curated
SCNpilot_cont_1000_bf_scaffold_789_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14843..15340)
DNA (498bp) protein (166aa)
Carbon monoxide dehydrogenase small chain n=1 Tax=Citreicella sp. SE45 RepID=D0DDV6_9RHOB
(2Fe-2S)-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_1000_bf_scaffold_789_17
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15337..17667)
DNA (2331bp) protein (777aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUV6_RUBXD
Xanthine dehydrogenase {ECO:0000313|EMBL:EWT06678.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
SCNpilot_cont_1000_bf_scaffold_789_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17664..18518)
DNA (855bp) protein (285aa)
Carbon monoxide dehydrogenase medium chain {ECO:0000313|EMBL:EGP10272.1}; EC=1.2.99.2 {ECO:0000313|EMBL:EGP10272.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
molybdopterin dehydrogenase, FAD-binding protein; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
Carbon monoxide dehydrogenase medium chain n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QET2_9BRAD
SCNpilot_cont_1000_bf_scaffold_789_19
Streptomyces ghanaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18864..19520
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00035C52EB
MarR-family regulatory protein {ECO:0000313|EMBL:EFE69472.2}; TaxID=566461 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ghanaensis ATCC 14672.;"
regulatory protein MarR
SCNpilot_cont_1000_bf_scaffold_789_20
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19649..20107
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QS75_9BRAD
Carbon monoxide dehydrogenase {ECO:0000313|EMBL:ETR75737.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein; K09386 hypothetical protein
SCNpilot_cont_1000_bf_scaffold_789_21
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20206..20853)
DNA (648bp) protein (216aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-]
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUW2_PARL1
SCNpilot_cont_1000_bf_scaffold_789_22
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20928..22367)
DNA (1440bp) protein (480aa)
UbiD family decarboxylase {ECO:0000313|EMBL:ABV95447.1}; EC=4.1.1.- {ECO:0000313|EMBL:ABV95447.1};; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
UbiD family decarboxylase n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LT80_DINSH
UbiD family decarboxylase
SCNpilot_cont_1000_bf_scaffold_789_23
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22476..23378
DNA (903bp) protein (301aa)
Transcriptional regulator n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LT79_DINSH
LysR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ABV95446.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
SCNpilot_cont_1000_bf_scaffold_789_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23553..24278
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEQ5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41127.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
AraC family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_789_25
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24373..27375
DNA (3003bp) protein (1001aa)
cutL; carbon monoxide dehydrogenase (EC:1.2.99.2); K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
carbon monoxide dehydrogenase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037C1D8F
Putative carbon monoxide dehydrogenase large chain {ECO:0000313|EMBL:BAR60778.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_1000_bf_scaffold_789_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27372..27836
DNA (465bp) protein (155aa)
molybdopterin dehydrogenase; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2]
carbon monoxide dehydrogenase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037A1417
Uncharacterized protein {ECO:0000313|EMBL:EKS41129.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Displaying 26 items

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