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SCNpilot_cont_1000_bf_scaffold_858

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_858_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..656
DNA (654bp) protein (218aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAQ6_9BRAD
Cation efflux system protein CzcA {ECO:0000313|EMBL:CEG09713.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
cation efflux system protein
SCNpilot_cont_1000_bf_scaffold_858_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

653..997
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030A71AE
Uncharacterized protein {ECO:0000313|EMBL:CEG09822.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_858_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1398..3020
DNA (1623bp) protein (541aa)
ccoN; cbb3-type cytochrome c oxidase subunit I (EC:1.9.3.1); K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1] rbh
Cbb3-type cytochrome oxidase, subunit CcoN n=2 Tax=Oligotropha carboxidovorans RepID=B6JJ53_OLICO rbh
Cbb3-type cytochrome oxidase, subunit CcoN {ECO:0000313|EMBL:AEI05497.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_1000_bf_scaffold_858_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3033..3764
DNA (732bp) protein (244aa)
ccoO; cytochrome c oxidase, Cbb3-type, subunit II (EC:1.9.3.1); K00405 cytochrome c oxidase cbb3-type subunit II rbh
Cytochrome c oxidase, cbb3-type, subunit II n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMC7_AFIFE rbh
Cytochrome c oxidase, cbb3-type, subunit II {ECO:0000313|EMBL:EKS29594.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_cont_1000_bf_scaffold_858_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3775..3927
DNA (153bp) protein (51aa)
fixQ; cytochrome-c oxidase subunit FixQ (EC:1.9.3.1); K00407 cytochrome c oxidase cbb3-type subunit IV
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NTM3_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29593.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_cont_1000_bf_scaffold_858_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3929..4798
DNA (870bp) protein (290aa)
ccoP; cytochrome c oxidase, Cbb3-type, subunit III (EC:1.9.3.1); K00406 cytochrome c oxidase cbb3-type subunit III rbh
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Afipia felis ATCC 53690 RepID=K8NGG8_AFIFE rbh
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_cont_1000_bf_scaffold_858_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4927..6486
DNA (1560bp) protein (520aa)
Cytochrome c oxidase accessory protein CcoG n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKF4_AFIFE rbh
Cytochrome c oxidase accessory protein CcoG {ECO:0000313|EMBL:EKS29591.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ccoG; cbb3-type cytochrome oxidase, accessory protein CcoG rbh
SCNpilot_cont_1000_bf_scaffold_858_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6483..6977
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQ06_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29590.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
nitrogen fixation protein FixH
SCNpilot_cont_1000_bf_scaffold_858_9

Not on your lists

7617..9086
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00035D03C2 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN55476.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_858_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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9105..10199
DNA (1095bp) protein (365aa)
sugar ABC transporter ATP binding protein; putative glycerol 3-phosphate transport protein, ugpC-like protein (EC:3.6.3.-) id=14626256 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
sugar ABC transporter ATP binding protein; putative glycerol 3-phosphate transport protein, ugpC-like protein (EC:3.6.3.-) rbh
Tax=CSP1_6_Rokubacteria
SCNpilot_cont_1000_bf_scaffold_858_11

Not on your lists

10196..11170
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00038035D8 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN55474.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC transporter permease; K02025 multiple sugar transport system permease protein
SCNpilot_cont_1000_bf_scaffold_858_12

Not on your lists

11172..12023
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003669AE0 rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN55473.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_cont_1000_bf_scaffold_858_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12598..13245)
DNA (648bp) protein (216aa)
Regulatory protein, TetR n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13F56_RHOPS
regulatory protein TetR
Regulatory protein, TetR {ECO:0000313|EMBL:ABE37283.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_858_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13412..15334
DNA (1923bp) protein (641aa)
AMP-dependent synthetase and ligase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13F57_RHOPS rbh
AMP-dependent synthetase and ligase rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABE37282.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_858_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15412..16629
DNA (1218bp) protein (406aa)
cytochrome P450; K00517 [EC:1.14.-.-] rbh
Cytochrome P450 n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13F58_RHOPS rbh
Cytochrome P450 {ECO:0000313|EMBL:ABE37281.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_858_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16651..17922
DNA (1272bp) protein (424aa)
Thiolase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13F59_RHOPS rbh
thiolase rbh
Thiolase {ECO:0000313|EMBL:ABE37280.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_1000_bf_scaffold_858_trna_1
unknown

Not on your lists

comp(18655..18723)
DNA (69bp)
transferRNA
Displaying 17 items

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