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SCNpilot_cont_1000_bf_scaffold_884

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_884_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(90..377)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZR9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34519.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_884_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

684..1943
DNA (1260bp) protein (420aa)
Phage major capsid protein, HK97 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNG0_NITHX rbh
phage major capsid protein, HK97 rbh
Phage major capsid protein, HK97 {ECO:0000313|EMBL:ABE62237.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_884_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2499..3254)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003641312
Heat shock protein-like protein {ECO:0000313|EMBL:KFC75611.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K09914 putative lipoprotein
SCNpilot_cont_1000_bf_scaffold_884_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3356..4084)
DNA (729bp) protein (243aa)
Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUE5_RHOP2 rbh
peptidase S1 and S6, chymotrypsin/Hap rbh
Peptidase S1 and S6, chymotrypsin/Hap {ECO:0000313|EMBL:ABD08165.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_884_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4216..4785
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217R4_RHOPB
bacteriophage protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87372.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_884_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4782..5102
DNA (321bp) protein (107aa)
head-tail adaptor protein n=1 Tax=Afipia birgiae RepID=UPI00030F8C67
Bacteriophage head-tail adaptor {ECO:0000313|EMBL:EGP07788.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
putative head-tail adaptor protein
SCNpilot_cont_1000_bf_scaffold_884_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5449..5865
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000349AF7D
Uncharacterized protein {ECO:0000313|EMBL:KIZ32703.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
gene transfer agent (GTA) orfg8
SCNpilot_cont_1000_bf_scaffold_884_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5935..6342
DNA (408bp) protein (136aa)
Phage major tail protein, TP901-1 family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V5H0_9BRAD
Phage major tail protein, TP901-1 family {ECO:0000313|EMBL:CEG08464.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
Phage major tail protein, TP901-1
SCNpilot_cont_1000_bf_scaffold_884_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6353..6682
DNA (330bp) protein (110aa)
Gene transfer agent (GTA) like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNF5_NITHX
gene transfer agent (GTA) like protein
Gene transfer agent (GTA) like protein {ECO:0000313|EMBL:ABE62242.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_884_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6679..6894
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031379B2
Uncharacterized protein {ECO:0000313|EMBL:EGP07792.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_884_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6884..7471
DNA (588bp) protein (196aa)
Gene transfer agent (GTA) like protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217Q7_RHOPB
gene transfer agent (GTA) like protein
Gene transfer agent (GTA) like protein {ECO:0000313|EMBL:ABD87379.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_884_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7598..8239
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07QB9_RHOP5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABJ05865.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_884_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8236..9144
DNA (909bp) protein (303aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUF4_RHOP2 rbh
bacteriophage protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD08156.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_884_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9250..9693
DNA (444bp) protein (148aa)
Putative phage cell wall peptidase, NlpC/P60 n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUF5_RHOP2
putative phage cell wall peptidase, NlpC/P60
Putative phage cell wall peptidase, NlpC/P60 {ECO:0000313|EMBL:ABD08155.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_884_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9693..13544
DNA (3852bp) protein (1284aa)
Gene transfer agent (GTA) orfg15, like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNE9_NITHX
Gene transfer agent (GTA) orfg15, like protein {ECO:0000313|EMBL:ABE62248.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
gene transfer agent (GTA) orfg15, like protein
SCNpilot_cont_1000_bf_scaffold_884_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13551..15215
DNA (1665bp) protein (555aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNE8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62249.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_884_17
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15257..16357)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Pseudomonas putida RepID=UPI00037D5710
hypothetical protein
Capsular polysaccharide biosynthesis O-acetyl transferase {ECO:0000313|EMBL:AFK71727.1}; TaxID=231023 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida ND6.;"
SCNpilot_cont_1000_bf_scaffold_884_18
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16536..17225
DNA (690bp) protein (230aa)
Thioredoxin reductase (NADPH) n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IRM1_9BRAD
Thioredoxin reductase (NADPH) {ECO:0000313|EMBL:ERF85449.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_884_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17222..17794
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QBP7_RHOPT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIZ47025.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_884_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17895..18566
DNA (672bp) protein (224aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNE2_NITHX
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABE62255.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_884_21
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18607..20007
DNA (1401bp) protein (467aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Putative two-component sensor histidine kinase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZAH3_9BRAD
putative two-component sensor histidine kinase
SCNpilot_cont_1000_bf_scaffold_884_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20052..21374
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QND9_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62258.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_884_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21515..22618
DNA (1104bp) protein (368aa)
Cytochrome c-type biogenesis protein CcmI n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKD7_9BRAD
Cytochrome c-type biogenesis protein CcmI {ECO:0000313|EMBL:EKS42041.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cytochrome C-type biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
SCNpilot_cont_1000_bf_scaffold_884_24
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22783..23244
DNA (462bp) protein (154aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TM87_9BRAD
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
cytochrome C-type biogenesis protein; K02197 cytochrome c-type biogenesis protein CcmE
SCNpilot_cont_1000_bf_scaffold_884_25
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23241..25220
DNA (1980bp) protein (660aa)
Cytochrome c-type biogenesis protein CycK n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ILQ8_9BRAD
Cytochrome C biogenesis protein CcmF {ECO:0000313|EMBL:KJC56916.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF
SCNpilot_cont_1000_bf_scaffold_884_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25225..25722
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PML6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42044.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cytochrome C biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
SCNpilot_cont_1000_bf_scaffold_884_27
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26104..27264
DNA (1161bp) protein (387aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-]
serine peptidase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030A11F5
Bradyrhizobium elkanii strain UASWS1015 Contig184, whole genome shotgun sequence {ECO:0000313|EMBL:KIU45341.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_1000_bf_scaffold_884_28
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27567..28274
DNA (708bp) protein (236aa)
Putative Two-component transcriptional regulator transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUZ1_9BRAD rbh
Putative Two-component transcriptional regulator transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis {ECO:0000313|EMBL:CCE10279.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_cont_1000_bf_scaffold_884_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28258..29706
DNA (1449bp) protein (483aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217N2_RHOPB rbh
periplasmic sensor signal transduction histidine kinase rbh
Displaying 29 items

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