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SCNpilot_cont_1000_bf_scaffold_918

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_918_1
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..947)
DNA (945bp) protein (315aa)
Sulfonate transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IKK4_9BRAD
Sulfonate transport system substrate-binding protein {ECO:0000313|EMBL:ERF84360.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_918_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1102..1587
DNA (486bp) protein (162aa)
Transcriptional regulator, TetR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218H5_RHOPB
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABD87211.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_1000_bf_scaffold_918_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1589..2518
DNA (930bp) protein (310aa)
Secretion protein HlyD n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X051_9BRAD
Secretion protein HlyD {ECO:0000313|EMBL:EAQ34388.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
secretion protein HlyD
SCNpilot_cont_1000_bf_scaffold_918_4
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2482..2646
DNA (165bp) protein (55aa)
Secretion protein HlyD n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X051_9BRAD
Secretion protein HlyD {ECO:0000313|EMBL:EAQ34388.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
secretion protein HlyD
SCNpilot_cont_1000_bf_scaffold_918_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2749..3852
DNA (1104bp) protein (368aa)
Acriflavin resistance protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJW9_NITHX
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:ABE63478.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_918_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3875..5647
DNA (1773bp) protein (591aa)
Acriflavin resistance protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJW9_NITHX
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:ABE63478.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_918_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5822..7441)
DNA (1620bp) protein (540aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PH34_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41962.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
GMC type oxidoreductase
SCNpilot_cont_1000_bf_scaffold_918_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7676..8845
DNA (1170bp) protein (390aa)
peptidase M20D, amidohydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
Peptidase M20D, amidohydrolase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q133F1_RHOPS
Amidohydrolase {ECO:0000313|EMBL:KIZ47463.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_1000_bf_scaffold_918_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8959..9456
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07QL4_RHOP5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABJ05770.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_1000_bf_scaffold_918_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9562..11010)
DNA (1449bp) protein (483aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Phage SPO1 DNA polymerase-related protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VFU4_RHOPX
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:ADU45295.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_1000_bf_scaffold_918_11
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11013..12239)
DNA (1227bp) protein (409aa)
Elongator protein 3/MiaB/NifB n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQC9_NITWN
elongator protein 3/MiaB/NifB
Elongator protein 3/MiaB/NifB {ECO:0000313|EMBL:ABA05512.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_1000_bf_scaffold_918_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12414..13328
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QK00_NITHX
hypothetical protein; K14160 protein ImuA
Uncharacterized protein {ECO:0000313|EMBL:ABE63447.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_918_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13303..14793
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PT81_9BRAD
hypothetical protein; K14161 protein ImuB
Uncharacterized protein {ECO:0000313|EMBL:EKS42735.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_1000_bf_scaffold_918_14
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14790..18119
DNA (3330bp) protein (1110aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
dnaE; error-prone DNA polymerase; K14162 error-prone DNA polymerase [EC:2.7.7.7] rbh
DNA polymerase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000382625E rbh
SCNpilot_cont_1000_bf_scaffold_918_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18235..18522)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QK03_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63444.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_918_16
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18641..20038
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PR02_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41970.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_cont_1000_bf_scaffold_918_17
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20191..20760)
DNA (570bp) protein (190aa)
enoyl-CoA hydratase (EC:4.2.1.17); K01692 enoyl-CoA hydratase [EC:4.2.1.17]
Enoyl-CoA hydratase/isomerase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X021_9BRAD
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EAQ34418.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_1000_bf_scaffold_918_18
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20973..21893)
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SQD6_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05505.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_1000_bf_scaffold_918_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22197..22742
DNA (546bp) protein (182aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PH46_9BRAD
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKS41977.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_1000_bf_scaffold_918_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22745..23383
DNA (639bp) protein (213aa)
Antibiotic transport system ATP-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IAK9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ40647.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_918_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23399..24505)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QK08_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63439.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_1000_bf_scaffold_918_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24585..25025)
DNA (441bp) protein (147aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IU65_RHOP2
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ABD08245.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_1000_bf_scaffold_918_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25052..25567)
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QL68_9BRAD
Diguanylate cyclase {ECO:0000313|EMBL:KIZ40652.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
diguanylate cyclase
Displaying 23 items

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