ggKbase home page
Advanced Search
Search Help

SCNpilot_cont_1000_bf_UNK

In projects: SCNPILOT_CONT_1000_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 10.11 Longest contig: 203.91 Kbp Bin length: 71.22 Mbp GC content: 59.17 %
Contigs count: 26361 Features count: 88849 rRNAs count: 12 tRNAs count: 107

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 21 / 38 MC: 17
Displaying items 351-400 of 26361 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_bf_scaffold_24725
Species: Rhodovulum sp. NI22 (50%)
2 1790 bp 59.33 3.49 100.89
SCNpilot_cont_1000_bf_scaffold_36024 3 1347 bp 63.92 4.64 100.89
SCNpilot_cont_1000_bf_scaffold_40188
Species: Rhodanobacter thiooxydans (50%)
2 1240 bp 65.24 5.44 100.89
SCNpilot_cont_1000_bf_scaffold_26578
Species: Nitrobacter hamburgensis (50%)
2 1692 bp 67.08 3.69 100.89
SCNpilot_cont_1000_bf_scaffold_39825
Species: Altererythrobacter atlanticus (50%)
2 1249 bp 58.85 1.80 100.88
SCNpilot_cont_1000_bf_scaffold_31680
Species: bacterium YEK0313 (100%)
3 1487 bp 62.61 3.87 100.87
SCNpilot_cont_1000_bf_scaffold_23937
Species: Flavobacterium beibuense (100%)
2 1832 bp 43.45 2.59 100.87
SCNpilot_cont_1000_bf_scaffold_49297 3 1038 bp 62.52 3.85 100.87
SCNpilot_cont_1000_bf_scaffold_49108
Species: Bradyrhizobium oligotrophicum (50%)
2 1041 bp 63.69 3.36 100.87
SCNpilot_cont_1000_bf_scaffold_38813
Species: Novosphingobium malaysiense (50%)
2 1273 bp 60.41 2.55 100.86
SCNpilot_cont_1000_bf_scaffold_25465
Species: Mesorhizobium alhagi (50%)
2 1749 bp 68.50 5.72 100.86
SCNpilot_cont_1000_bf_scaffold_43024
Species: Wolbachia pipientis (50%)
2 1175 bp 56.00 4.47 100.85
SCNpilot_cont_1000_bf_scaffold_15646
Species: Afipia felis (100%)
4 2487 bp 59.83 3.62 100.84
SCNpilot_cont_1000_bf_scaffold_18114
Species: Chitinophaga pinensis (50%)
2 3317 bp 56.07 42.73 100.84
SCNpilot_cont_1000_bf_scaffold_37302
Species: Azospirillum lipoferum (50%)
2 1312 bp 61.43 25.91 100.84
SCNpilot_cont_1000_bf_scaffold_47588
Species: Streptomyces tsukubaensis (50%)
2 1074 bp 65.08 2.33 100.84
SCNpilot_cont_1000_bf_scaffold_29708 3 1559 bp 65.94 3.21 100.83
SCNpilot_cont_1000_bf_scaffold_26617
Species: Afipia sp. 1NLS2 (66.67%)
3 1690 bp 64.44 4.14 100.83
SCNpilot_cont_1000_bf_scaffold_29019 2 1586 bp 58.70 3.78 100.82
SCNpilot_cont_1000_bf_scaffold_36231
Species: Lyngbya confervoides (50%)
2 1342 bp 64.68 4.66 100.82
SCNpilot_cont_1000_bf_scaffold_40670
Species: Hyphomicrobium sp. MC1 (100%)
2 1229 bp 58.26 5.29 100.81
SCNpilot_cont_1000_bf_scaffold_31879
Species: Afipia felis (100%)
2 1479 bp 60.24 2.54 100.81
SCNpilot_cont_1000_bf_scaffold_45932 3 1110 bp 72.88 4.95 100.81
SCNpilot_cont_1000_bf_scaffold_28581
Order: Rhizobiales (66.67%)
3 1604 bp 67.96 4.52 100.81
SCNpilot_cont_1000_bf_scaffold_31558 2 1491 bp 62.78 4.02 100.80
SCNpilot_cont_1000_bf_scaffold_39629
Species: Chelativorans sp. BNC1 (100%)
2 1253 bp 63.93 3.99 100.80
SCNpilot_cont_1000_bf_scaffold_45090
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1128 bp 32.71 6.87 100.80
SCNpilot_cont_1000_bf_scaffold_50836
Species: Flavobacterium subsaxonicum (50%)
2 1006 bp 50.60 3.98 100.79
SCNpilot_cont_1000_bf_scaffold_17761
Species: Microbacterium mangrovi (66.67%)
3 2280 bp 72.50 4.71 100.79
SCNpilot_cont_1000_bf_scaffold_30686
Species: Caulobacter sp. K31 (50%)
2 1521 bp 57.73 3.62 100.79
SCNpilot_cont_1000_bf_scaffold_50088
Genus: Microbacterium (66.67%)
3 1021 bp 72.28 3.43 100.78
SCNpilot_cont_1000_bf_scaffold_34105
Species: Afipia felis (100%)
3 1405 bp 59.50 4.27 100.78
SCNpilot_cont_1000_bf_scaffold_49658
Species: Tateyamaria sp. ANG-S1 (50%)
2 1030 bp 67.67 5.10 100.78
SCNpilot_cont_1000_bf_scaffold_36083 2 2337 bp 19.30 3.53 100.77
SCNpilot_cont_1000_bf_scaffold_27795
Phylum: Proteobacteria (80%)
5 2992 bp 61.97 4.51 100.77
SCNpilot_cont_1000_bf_scaffold_43120
Species: Roseivivax halodurans (100%)
3 1173 bp 64.11 2.98 100.77
SCNpilot_cont_1000_bf_scaffold_26411
Genus: Microbacterium (100%)
3 1700 bp 74.24 4.26 100.76
SCNpilot_cont_1000_bf_scaffold_42317
Order: Rhizobiales (100%)
3 1191 bp 65.24 9.03 100.76
SCNpilot_cont_1000_bf_scaffold_23500
Species: Rhodosporidium toruloides (50%)
2 1858 bp 62.97 4.71 100.75
SCNpilot_cont_1000_bf_scaffold_16414
Species: Bradyrhizobium sp. DFCI-1 (100%)
4 2409 bp 59.24 4.88 100.75
SCNpilot_cont_1000_bf_scaffold_31688
Species: BJP_08E140C01_Actinomycetales_70_11 (100%)
3 1486 bp 66.62 5.05 100.74
SCNpilot_cont_1000_bf_scaffold_35851
Species: Conexibacter woesei (100%)
2 1352 bp 70.34 5.92 100.74
SCNpilot_cont_1000_bf_scaffold_35746
Species: Hyphomicrobium denitrificans (100%)
3 1355 bp 60.52 2.77 100.74
SCNpilot_cont_1000_bf_scaffold_31517
Species: Comamonas testosteroni (66.67%)
3 1492 bp 56.70 2.68 100.74
SCNpilot_cont_1000_bf_scaffold_25088
Class: Actinobacteria (66.67%)
3 1769 bp 70.49 5.51 100.74
SCNpilot_cont_1000_bf_scaffold_22930
Genus: Devosia (100%)
5 2862 bp 66.60 4.63 100.73
SCNpilot_cont_1000_bf_scaffold_22612 4 1912 bp 31.17 3.14 100.73
SCNpilot_cont_1000_bf_scaffold_35259
Species: Nitrobacter sp. Nb-311A (66.67%)
3 1370 bp 57.81 4.74 100.73
SCNpilot_cont_1000_bf_scaffold_24777
Order: Rhizobiales (66.67%)
3 1787 bp 61.28 5.46 100.73
SCNpilot_cont_1000_bf_scaffold_45720 4 1114 bp 61.67 5.16 100.72
Displaying items 351-400 of 26361 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.