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SCNpilot_cont_1000_bf_UNK

In projects: SCNPILOT_CONT_1000_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 10.11 Longest contig: 203.91 Kbp Bin length: 71.22 Mbp GC content: 59.17 %
Contigs count: 26361 Features count: 88849 rRNAs count: 12 tRNAs count: 107

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 21 / 38 MC: 17
Displaying items 401-450 of 26361 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_bf_scaffold_39591
Species: Haematobacter massiliensis (50%)
2 1254 bp 64.27 2.39 100.72
SCNpilot_cont_1000_bf_scaffold_45590
Species: Pseudomonas sp. BAY1663 (50%)
2 1117 bp 67.14 3.13 100.72
SCNpilot_cont_1000_bf_scaffold_33789
Domain: Bacteria (66.67%)
3 1415 bp 69.89 2.83 100.71
SCNpilot_cont_1000_bf_scaffold_16324
Species: Polymorphum gilvum (50%)
2 2419 bp 66.97 3.82 100.70
SCNpilot_cont_1000_bf_scaffold_10180
Species: Moniliophthora roreri (50%)
2 4585 bp 62.51 5.40 100.70
SCNpilot_cont_1000_bf_scaffold_25920
Genus: Afipia (66.67%)
3 1725 bp 63.48 10.87 100.70
SCNpilot_cont_1000_bf_scaffold_10193
Species: Polymorphum gilvum (100%)
2 3310 bp 72.93 3.63 100.70
SCNpilot_cont_1000_bf_scaffold_50640
Species: Afipia sp. P52-10 (50%)
2 1010 bp 69.50 2.97 100.69
SCNpilot_cont_1000_bf_scaffold_43722
Species: Achromobacter sp. RTa (66.67%)
3 1159 bp 64.45 4.96 100.69
SCNpilot_cont_1000_bf_scaffold_37601
Species: RIFOXYA1_FULL_Rhodanobacter_67_6_curated (100%)
2 1305 bp 67.05 9.58 100.69
SCNpilot_cont_1000_bf_scaffold_50169
Genus: Cellulomonas (66.67%)
3 1019 bp 76.05 3.93 100.69
SCNpilot_cont_1000_bf_scaffold_36882 3 1323 bp 62.81 3.59 100.68
SCNpilot_cont_1000_bf_scaffold_49453
Species: Rhizopus delemar (50%)
2 1034 bp 35.78 5.32 100.68
SCNpilot_cont_1000_bf_scaffold_31676
Species: Pseudomonas bauzanensis (100%)
2 1487 bp 63.21 11.94 100.67
SCNpilot_cont_1000_bf_scaffold_48868
Species: Citreicella sp. SE45 (50%)
2 1046 bp 70.94 3.82 100.67
SCNpilot_cont_1000_bf_scaffold_48551
Species: Methylobacterium extorquens (50%)
2 1052 bp 58.56 3.80 100.67
SCNpilot_cont_1000_bf_scaffold_48574
Species: Rhodopseudomonas palustris (100%)
2 1052 bp 63.97 3.80 100.67
SCNpilot_cont_1000_bf_scaffold_41756
Species: Sphingobium sp. SYK-6 (100%)
2 1204 bp 65.53 3.32 100.66
SCNpilot_cont_1000_bf_scaffold_43495 4 2265 bp 62.16 7.17 100.66
SCNpilot_cont_1000_bf_scaffold_41349
Species: Afipia felis (100%)
2 1213 bp 59.19 2.47 100.66
SCNpilot_cont_1000_bf_scaffold_12094
Domain: Eukaryota (66.67%)
3 4098 bp 62.37 6.22 100.66
SCNpilot_cont_1000_bf_scaffold_35225
Species: Pseudomonas bauzanensis (50%)
2 1371 bp 67.98 4.01 100.66
SCNpilot_cont_1000_bf_scaffold_40954 2 1222 bp 56.22 3.27 100.66
SCNpilot_cont_1000_bf_scaffold_26552
Genus: Rhodanobacter (66.67%)
3 1693 bp 73.72 4.43 100.65
SCNpilot_cont_1000_bf_scaffold_39836
Species: Rhodopseudomonas palustris (50%)
2 1249 bp 65.89 6.81 100.64
SCNpilot_cont_1000_bf_scaffold_39680
Species: Actinotalea fermentans (100%)
2 1252 bp 71.73 3.00 100.64
SCNpilot_cont_1000_bf_scaffold_33674
Species: Bradyrhizobium sp. BTAi1 (50%)
4 1419 bp 67.79 97.43 100.63
SCNpilot_cont_1000_bf_scaffold_33558
Species: Rhodopseudomonas palustris (50%)
2 1422 bp 64.70 4.04 100.63
SCNpilot_cont_1000_bf_scaffold_18361
Genus: Bradyrhizobium (66.67%)
3 2227 bp 65.20 20.09 100.63
SCNpilot_cont_1000_bf_scaffold_20288
Order: Xanthomonadales (50%)
4 2072 bp 69.31 5.55 100.63
SCNpilot_cont_1000_bf_scaffold_13668 3 2728 bp 65.03 5.96 100.62
SCNpilot_cont_1000_bf_scaffold_32740
Class: Betaproteobacteria (66.67%)
3 1449 bp 63.42 3.11 100.62
SCNpilot_cont_1000_bf_scaffold_12389
Species: Phyllobacterium sp. YR531 (83.33%)
6 4028 bp 65.19 4.41 100.62
SCNpilot_cont_1000_bf_scaffold_32457 2 1458 bp 21.47 2.57 100.62
SCNpilot_cont_1000_bf_scaffold_44342
Species: Methyloversatilis universalis (50%)
2 1145 bp 55.72 4.37 100.61
SCNpilot_cont_1000_bf_scaffold_37424
Species: Cyanothece sp. PCC 7424 (50%)
2 1309 bp 61.50 7.83 100.61
SCNpilot_cont_1000_bf_scaffold_18479
Species: BJP_08E140C01_Actinomycetales_70_11 (50%)
6 3286 bp 68.84 4.87 100.61
SCNpilot_cont_1000_bf_scaffold_31556
Species: Afipia felis (100%)
2 1491 bp 62.78 4.53 100.60
SCNpilot_cont_1000_bf_scaffold_31450
Species: Oceanibaculum indicum (100%)
2 1494 bp 61.31 5.86 100.60
SCNpilot_cont_1000_bf_scaffold_7490
Species: Bradyrhizobium sp. STM 3843 (50%)
6 3999 bp 65.49 6.44 100.60
SCNpilot_cont_1000_bf_scaffold_19008
Domain: Bacteria (50%)
4 2171 bp 69.55 6.10 100.60
SCNpilot_cont_1000_bf_scaffold_6010
Species: Microbacterium mangrovi (60%)
5 4566 bp 70.74 5.69 100.59
SCNpilot_cont_1000_bf_scaffold_9735
Order: Rhizobiales (100%)
3 3403 bp 64.30 6.76 100.59
SCNpilot_cont_1000_bf_scaffold_35371 5 1366 bp 59.52 3.84 100.59
SCNpilot_cont_1000_bf_scaffold_41821 2 1202 bp 55.74 6.24 100.58
SCNpilot_cont_1000_bf_scaffold_29929
Species: Alicycliphilus denitrificans (50%)
2 1551 bp 62.41 8.54 100.58
SCNpilot_cont_1000_bf_scaffold_8570
Species: BJP_08E140C01_Actinomycetales_70_11 (60%)
5 5184 bp 73.21 6.46 100.58
SCNpilot_cont_1000_bf_scaffold_49245
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated (50%)
2 1038 bp 65.90 2.89 100.58
SCNpilot_cont_1000_bf_scaffold_6095 8 4531 bp 58.49 5.13 100.57
SCNpilot_cont_1000_bf_scaffold_29066
Phylum: Chloroflexi (66.67%)
3 1584 bp 64.77 3.63 100.57
Displaying items 401-450 of 26361 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.