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SCNpilot_cont_1000_bf_scaffold_72

Search features with annotation key words

Displaying items 1-30 of 278 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_72_1
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135..1121)
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000381886A
NAD-dependent epimerase {ECO:0000313|EMBL:KJB94528.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_1000_bf_scaffold_72_2
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1179..3833)
DNA (2655bp) protein (885aa)
UPI0003CEF28B related cluster n=1 Tax=unknown RepID=UPI0003CEF28B rbh
Uncharacterized protein {ECO:0000313|EMBL:ESW84182.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
peptidase C14 caspase catalytic subunit p20 rbh
SCNpilot_cont_1000_bf_scaffold_72_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4047..4934
DNA (888bp) protein (296aa)
UPI0003CE2CE1 related cluster n=1 Tax=unknown RepID=UPI0003CE2CE1
Choline/ethanolamine kinase {ECO:0000313|EMBL:EHK52424.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
choline/ethanolamine kinase
SCNpilot_cont_1000_bf_scaffold_72_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4931..7354
DNA (2424bp) protein (808aa)
sarcosine dehydrogenase; K00314 sarcosine dehydrogenase [EC:1.5.8.3]
FAD dependent oxidoreductase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I3M0_9RHIZ
FAD dependent oxidoreductase {ECO:0000313|EMBL:EHK52423.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_1000_bf_scaffold_72_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7351..8100
DNA (750bp) protein (250aa)
PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1B1F4
Strain MEJ076 contig_43, whole genome shotgun sequence {ECO:0000313|EMBL:KIP98180.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
etfB; electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit
SCNpilot_cont_1000_bf_scaffold_72_6
Fulvimarina pelagi, Fulvimarina, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8097..8918
DNA (822bp) protein (274aa)
Electron transfer flavoprotein large subunit n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G7U5_9RHIZ
Electron transfer flavoprotein large subunit {ECO:0000313|EMBL:EAU42269.1}; TaxID=314231 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Fulvimarina.;" source="Fulvimarina pelagi HTCC2506.;"
electron transfer flavoprotein large subunit; K03522 electron transfer flavoprotein alpha subunit
SCNpilot_cont_1000_bf_scaffold_72_7
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8919..10829
DNA (1911bp) protein (637aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IB83_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIF27985.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_72_8
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10859..11683
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000373A777
Amidohydrolase {ECO:0000313|EMBL:KKB13126.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein; K07046
SCNpilot_cont_1000_bf_scaffold_72_9
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11959..13851)
DNA (1893bp) protein (631aa)
ABC-type multidrug transport system, ATPase and permease component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KRI2_MESAW rbh
ABC-transport protein, ATP-binding component {ECO:0000313|EMBL:CDP50477.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
ABC-type multidrug transport system, ATPase and permease component rbh
SCNpilot_cont_1000_bf_scaffold_72_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13853..15703)
DNA (1851bp) protein (617aa)
UPI0003D0240C related cluster n=1 Tax=unknown RepID=UPI0003D0240C rbh
Multidrug ABC transporter {ECO:0000313|EMBL:KFL24777.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial rbh
SCNpilot_cont_1000_bf_scaffold_72_11
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16051..17445
DNA (1395bp) protein (465aa)
Undecaprenyl-phosphate galactosephosphotransferase {ECO:0000313|EMBL:BAQ15685.1}; EC=2.7.8.6 {ECO:0000313|EMBL:BAQ15685.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Putative glycosyl transferase n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CGM1_METED
glycosyl transferase
SCNpilot_cont_1000_bf_scaffold_72_12
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17442..18230
DNA (789bp) protein (263aa)
UDP-hexose transferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG9_9RHIZ
UDP-hexose transferase {ECO:0000313|EMBL:CDX13654.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
UDP-hexose transferase
SCNpilot_cont_1000_bf_scaffold_72_13
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18227..19393
DNA (1167bp) protein (389aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX13651.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_72_14
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19390..20553)
DNA (1164bp) protein (388aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX13650.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_72_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20782..22212
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSZ1_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB74347.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_1000_bf_scaffold_72_16
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22380..23462)
DNA (1083bp) protein (361aa)
Group 1 glycosyl transferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG5_9RHIZ
Group 1 glycosyl transferase {ECO:0000313|EMBL:CDX13646.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
glycosyl transferase, group 1
SCNpilot_cont_1000_bf_scaffold_72_17
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23469..24839)
DNA (1371bp) protein (457aa)
Polysaccharide biosynthesis protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG4_9RHIZ
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CDX13644.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
polysaccharide biosynthesis protein
SCNpilot_cont_1000_bf_scaffold_72_18
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25087..27000
DNA (1914bp) protein (638aa)
Putative exopolysaccharide biosynthesis protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW41_RHITR
Putative exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:CDX13641.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
putative exopolysaccharide biosynthesis protein
SCNpilot_cont_1000_bf_scaffold_72_19
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26997..28031
DNA (1035bp) protein (345aa)
Endoglucanase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG2_9RHIZ
Endoglucanase {ECO:0000313|EMBL:EHH09184.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
putative endoglucanase
SCNpilot_cont_1000_bf_scaffold_72_20
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28028..29542
DNA (1515bp) protein (505aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YGG1_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09183.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_72_21
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29619..30644
DNA (1026bp) protein (342aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037B945A rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:KFL29642.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator rbh
SCNpilot_cont_1000_bf_scaffold_72_22
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30754..32031
DNA (1278bp) protein (426aa)
ABC transporter substrate-binding protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EDZ1_9RHOB rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB86332.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
extracellular solute-binding protein; K10188 lactose/L-arabinose transport system substrate-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_72_23
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32158..33048
DNA (891bp) protein (297aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UH10_SINMW rbh
Lactose ABC transporter permease {ECO:0000313|EMBL:KKB86333.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
binding-protein-dependent transport system inner membrane protein; K10189 lactose/L-arabinose transport system permease protein rbh
SCNpilot_cont_1000_bf_scaffold_72_24
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33045..33860
DNA (816bp) protein (272aa)
Lactose ABC transporter permease n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q1G3_9RHIZ rbh
Lactose ABC transporter permease {ECO:0000313|EMBL:KKB81217.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
lacG; ABC transporter permease; K10190 lactose/L-arabinose transport system permease protein rbh
SCNpilot_cont_1000_bf_scaffold_72_25
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33874..36063
DNA (2190bp) protein (730aa)
beta-galactosidase; K01190 beta-galactosidase [EC:3.2.1.23] rbh
Beta-galactosidase Bgal1-3 n=1 Tax=uncultured bacterium RepID=M9ZAD3_9BACT rbh
Beta-D-galactosidase {ECO:0000313|EMBL:KKB81216.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCNpilot_cont_1000_bf_scaffold_72_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36074..37132
DNA (1059bp) protein (353aa)
ABC-type sugar transport systems, ATPase component n=2 Tax=Rhizobium meliloti RepID=M4IMH9_RHIML rbh
ABC-type sugar transport systems, ATPase component rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDH82803.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_cont_1000_bf_scaffold_72_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37204..38766
DNA (1563bp) protein (521aa)
PAS domain S-box protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLM4_AFIFE
PAS domain S-box protein {ECO:0000313|EMBL:EKS30026.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
PAS/PAC sensor hybrid histidine kinase
SCNpilot_cont_1000_bf_scaffold_72_28
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38798..40081
DNA (1284bp) protein (428aa)
dapE2; succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] rbh
Succinyl-diaminopimelate desuccinylase n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LKH0_DINSH rbh
Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:KFL27193.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_cont_1000_bf_scaffold_72_29
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40186..41664
DNA (1479bp) protein (493aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CV95_9RHIZ rbh
Peptide/opine/nickel uptake family ABC transporter , periplasmic substrate-binding protein {ECO:0000313|EMBL:CDP51478.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_72_30
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41863..42807
DNA (945bp) protein (315aa)
Peptide/opine/nickel uptake family ABC transporter, permease protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TVW9_9RHOB rbh
Peptide ABC transporter {ECO:0000313|EMBL:KFL27191.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
gsiC1; glutathione transport system permease GsiC rbh
Displaying items 1-30 of 278 in total

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